View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_37 (Length: 244)
Name: NF14726_low_37
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17999155 - 17998934
Alignment:
| Q |
1 |
caacctcctcaaacaagggtatcaaatgagtctcttatattacactatggtttttgagtttttaaagtgtttagtttgagaaaaaacatgtttaaaatac |
100 |
Q |
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| T |
17999155 |
caacctcctcaaacaagggtatcaaatgagtctcttatattacactacggtttttgagtttttaaagtgtttagtttgagaaaaaacatgtttaaaatac |
17999056 |
T |
|
| Q |
101 |
tgaaaacatttctattttggttaacttctttacactgtattagaaaatgcaacatctcattttgaatagtgctcatttcggtatgttacaagaacacaaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17999055 |
tgaaaacatttctattttgtttaacttctttacactgtattacaaaatgcaacatctcattttgaatagtgctcattttggtatgttacaagaacacaaa |
17998956 |
T |
|
| Q |
201 |
cgttaccggtaaattaaaggac |
222 |
Q |
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||||||||||||||| |||||| |
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| T |
17998955 |
cgttaccggtaaatttaaggac |
17998934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17993834 - 17993613
Alignment:
| Q |
1 |
caacctcctcaaacaagggtatcaaatgagtctcttatattacactatggtttttgagtttttaaagtgtttagtttgagaaaaaacatgtttaaaatac |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17993834 |
caacctcctcaaacaagggtatcaaatgagtctcttatattacaccacggtttttgagtttttaaagtgtttagtttgagaaaaaacatgtttaaaatac |
17993735 |
T |
|
| Q |
101 |
tgaaaacatttctattttggttaacttctttacactgtattagaaaatgcaacatctcattttgaatagtgctcatttcggtatgttacaagaacacaaa |
200 |
Q |
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| T |
17993734 |
tgaaaacatttctattttgtttaacttctttacactgtattacaaaatgcaacatctcattttgaatagtgctcattttggtatgttacaagaacacaaa |
17993635 |
T |
|
| Q |
201 |
cgttaccggtaaattaaaggac |
222 |
Q |
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||||||||||||||| |||||| |
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| T |
17993634 |
cgttaccggtaaatttaaggac |
17993613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 11098184 - 11098395
Alignment:
| Q |
12 |
aacaagggtatcaaatgagtctcttatattacactat-ggtttttgagtttttaaagtgtttagtttgagaaaaaacatgtttaaaatactgaaaacatt |
110 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11098184 |
aacaagggtatcaaatgagtctcttatattacacttgcggtttttgagtttttaaagtgtttagtttgagaaaaaacatgtttaaaatactgaaaacatt |
11098283 |
T |
|
| Q |
111 |
tctattttggttaacttctttacactgtattagaaaatgcaacatctcattttgaatagtgctcatttcggtatgttacaagaacacaaacgttaccggt |
210 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11098284 |
tctattttgtttaacttctttacactgtattacaaaatgcaacatctcattttgaatagtgctcattttggtatgttacaagaacacaaacgttaccggt |
11098383 |
T |
|
| Q |
211 |
aaattaaaggac |
222 |
Q |
| |
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||||| |||||| |
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|
| T |
11098384 |
aaatttaaggac |
11098395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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