View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_4 (Length: 510)
Name: NF14726_low_4
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 8509534 - 8509323
Alignment:
| Q |
11 |
catcatcaagttaagggaaaagtatgaaaattagccaccaaatttttt-catgcattagttttgcttctttcctatctcactcacttaacatgtgaccta |
109 |
Q |
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| T |
8509534 |
catcatcatgttaagggaaaagtatgaaaattagccaccaaatttttttcatgcattagttttgcttctttcctatctcactcacttaacatgtgaccta |
8509435 |
T |
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| Q |
110 |
aaatgtaagtaactgaaattggatgtgtttaaattcttcatctcaggccatgattaaagaagttgctacttactagtcttgtggcccaattcttgttttt |
209 |
Q |
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| T |
8509434 |
aaatgtaagtaactgaaattggatgtgtttaaattcttcatctcaggccatgattaaagaagttgctacttattagtcttgtggcccaattcttgttttt |
8509335 |
T |
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| Q |
210 |
gttagttatgag |
221 |
Q |
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|||||||||||| |
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| T |
8509334 |
gttagttatgag |
8509323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 342 - 478
Target Start/End: Complemental strand, 8509202 - 8509065
Alignment:
| Q |
342 |
caattgcgtaatttaatgatacatgatcttcagttaggatgaagttttcccacctccaaaatcactttgaagttcgtatgaggnnnnnnngtacagc-tt |
440 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
8509202 |
caattgcataatttaatgatacatgatcttcaattaggatgaagttttcccacctccaaaatcactttgaagttcgtatgaggaaaaaaagtacagcttt |
8509103 |
T |
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| Q |
441 |
tatgtcgttcagatgtatatttccatataaaaacacag |
478 |
Q |
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| T |
8509102 |
tatgtcgttcagatgtatatttccatatagaaacacag |
8509065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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