View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_6 (Length: 506)
Name: NF14726_low_6
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 8930748 - 8930450
Alignment:
| Q |
1 |
acaccatggaagatcggtattaaggtcctaaagcacaatgaagccatatattcctttagtataatattttcgcttcnnnnnnnnnnnnntttttgcacta |
100 |
Q |
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| T |
8930748 |
acaccatggaagattgtttttaaggtcctaaagcacaatgaagaaatatattcctttagtataatattttagcttccaaaaaaaaaaa-ttgttgcagta |
8930650 |
T |
|
| Q |
101 |
tcaactataggtacaccatttagatcaactccagtgaggtaaattgttacaaaaatattttcctatatagcttgatttaaggaaaatgttattattttga |
200 |
Q |
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| T |
8930649 |
tcaattataggtacaccatttggatcaactccaatgaggtaaattgttacaaaaatattttcctata--gcttgatttaaagaaaatattattattttga |
8930552 |
T |
|
| Q |
201 |
aatcgacaacaaaatcatacattggagacgaaaatcaggcgtttgagttttcagctatggtttaagtactattttaaatcattttctaattcaatcactg |
300 |
Q |
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| T |
8930551 |
aattgacaacaaaatcatacattggagacgaaaatcaggcgtttgagttttcagctatggtttaagtactattttaaatcattttctaattcaatcactg |
8930452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 307 - 488
Target Start/End: Complemental strand, 8928808 - 8928627
Alignment:
| Q |
307 |
aaaatattatgcaatcatgaaatttatttatactaccaatcatagnnnnnnnacaacactaccaatcatagttattaagtcgttttatatagactaagta |
406 |
Q |
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| T |
8928808 |
aaaatattatgcaatcatgaaatttatttatactaccaatcatagtttttttacaacactaccaatcatagttattaagtcgttttatatagactaagta |
8928709 |
T |
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| Q |
407 |
aacatttttaagtctataaaaaacgacaattcaacaaagaatgtttttatagactaaaaatgtttactcaatgagtgtttga |
488 |
Q |
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| T |
8928708 |
aacatttttaagtctataaaaaacgacaattcaacaaagaatgtttttatagactaaaaatgtttacttaatgagtgtttga |
8928627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 106 - 302
Target Start/End: Complemental strand, 8955129 - 8954933
Alignment:
| Q |
106 |
tataggtacaccatttagatcaactccagtgaggtaaattgttacaaaaatattttcctatatagcttgatttaaggaaaatgttattattttgaaatcg |
205 |
Q |
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|||||||||||||||| |||||||| || ||||||||||| |||||||| |||||| ||| |||||||||||||| ||| | |||||||||| |||| | |
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| T |
8955129 |
tataggtacaccatttggatcaactacaatgaggtaaattattacaaaa-tatttttctacatagcttgatttaaagaacgtattattattttcaaattg |
8955031 |
T |
|
| Q |
206 |
acaacaaaatcatacattggagacgaaaatcaggcgtttga-gttttcagctatggtttaagtactattttaaatcattttctaattcaatcactgag |
302 |
Q |
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| T |
8955030 |
acgccaaaatcagacattggagatgaaaattagtcgtttgatgttttcaactaatgtttaagtactattttaaatcattttctaaatcaatcactgag |
8954933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 307 - 488
Target Start/End: Complemental strand, 8954878 - 8954700
Alignment:
| Q |
307 |
aaaatattatgcaatcatgaaatttatttatactaccaatcatagnnnnnnnacaacactaccaatcatagttattaagtcgttttatatagactaagta |
406 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||| || ||||||||| |
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| T |
8954878 |
aaaattttatgcaatcaagaaatttatttatactaccaatcatagtttttttacaacgctacaaatcatagttatcaagtcgttttaaatggactaagta |
8954779 |
T |
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| Q |
407 |
aacatttttaagtctataaaaaacgacaattcaacaaagaatgtttttatagactaaaaatgtttactcaatgagtgtttga |
488 |
Q |
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|||| |||| |||| ||||||| | ||||||||||||||||||||||||||||||| |||||||| | |||||||||| |
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| T |
8954778 |
aacaatttt-agtc--taaaaaatggtcattcaacaaagaatgtttttatagactaaaattgtttacttatcgagtgtttga |
8954700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 8941234 - 8941192
Alignment:
| Q |
106 |
tataggtacaccatttagatcaactccagtgaggtaaattgtt |
148 |
Q |
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| T |
8941234 |
tataggtacaccatttggatcaactccaatgaggtcaattgtt |
8941192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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