View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_8 (Length: 500)
Name: NF14726_low_8
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 116 - 493
Target Start/End: Original strand, 46092766 - 46093134
Alignment:
| Q |
116 |
ttgtcggaattttctaacactaaacaatgtcaaagagtttgtaa----ataattgcgcacnnnnnnnnnnnnnnnnntccattatcaccatttccttgaa |
211 |
Q |
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| T |
46092766 |
ttgtcggaattttctaacactaaacaatgtcaaagagtttgtaattaaataattgcgcactagtagtagtagta---tccattatcacaatttccttcaa |
46092862 |
T |
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| Q |
212 |
tcaatgaatagagtttgtatatagtgttaattaactgattatgtgaggttgcgtagcttgttctggttacgaatcaatgaaaggagcatataattagtat |
311 |
Q |
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| T |
46092863 |
tcaatgaatagagtttgtatatagtgttaatta-ctgattatgtgaggttgcgtagcttgttctggttacgaatcaatgaaaggagcatataattagtat |
46092961 |
T |
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| Q |
312 |
aaacaaaattcagacagttgggccatatagtcgatatatgtagctgttgtatgacgacaggagcatcattgagaggataagtggattcctttggccacac |
411 |
Q |
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| T |
46092962 |
aaacaaaattcagacacttgggccatatagtcgatatatgtagctgttgtatgacgacaggagcatcattgagaggataagtggattcctttggccacac |
46093061 |
T |
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| Q |
412 |
gcaatcgtgtggttgccacacaacacatcctatatatgcataaaacaaattactactacttattaagtatatttgacttcat |
493 |
Q |
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| T |
46093062 |
gctatcgtgtggttgcc-----acacatcc----tatgcataaaacaaattactactacttattaagtatatttgacttcat |
46093134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 46092620 - 46092700
Alignment:
| Q |
17 |
atatgttaggtaaattcttaggtataccctggagtaattgagagataataaacgtataaatattagattatattttatttca |
98 |
Q |
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| T |
46092620 |
atatgttaggtacattcttagatataccctgaagtaattgagagataacaaacgtat-aatattatattttattttatttca |
46092700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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