View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_9 (Length: 498)
Name: NF14726_low_9
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 188 - 483
Target Start/End: Complemental strand, 48632448 - 48632153
Alignment:
| Q |
188 |
attgtgccaacaactattgatattttacattggttgatgcaaagttttggatttgtttaattcaacggacggagaagggagagattttattagaaggagg |
287 |
Q |
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| T |
48632448 |
attgtgccaacaactattgatattttacattggttcatggaaagttttggatttgtttaattcaacggacggagaagggagagattttattagaaggagg |
48632349 |
T |
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| Q |
288 |
ggaaaataaaaagaattatgctctttacacaacagtttttgctcgtttccaactgaaaatatcattttgcccctgcgcatgttaagtcacgtacctctag |
387 |
Q |
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| T |
48632348 |
ggaaaataaaaagaattatgctctttacacaacagtttttgctcgtttccaattgaaaatatcattttgcccctgcgtatgttaagtcacgcacctctag |
48632249 |
T |
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| Q |
388 |
tcggtggcgttagttaactcacgctggtatggtcggtggtctgggctcaagaacacgttttatgaacgattcttaacttttcttaattgagtttac |
483 |
Q |
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| T |
48632248 |
tcggtggcgtgagttaactcacgctgctatggccaatggtctcggctcaagaacacgtttttttaacgattcttaacttttcttaattgagtttac |
48632153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 48632626 - 48632529
Alignment:
| Q |
1 |
gcaataaactgttgcgaccaattttgaatagtgtgactgaatgataattatacagttacttgatgcaactttcatagtgaaatgtgaattacatattg |
98 |
Q |
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| T |
48632626 |
gcaataaactgttgcgatcaattttgaatagtgtgactgaatgataattatacagttacttgatgcaactttcatagtgaaatgtgaattacatattg |
48632529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 457
Target Start/End: Original strand, 36310414 - 36310501
Alignment:
| Q |
369 |
ttaagtcacgtacctctagtcggtggcgttagttaactcacgctggtatggtcggtggtctgggctcaagaacacgttttatgaacgat |
457 |
Q |
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| T |
36310414 |
ttaagtcacgcacctctgggtggtagcgtgagttaactcacgctgctttgaccggtggtctgagctcaagaacacgtttt-tgaacgat |
36310501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 25358934 - 25358979
Alignment:
| Q |
298 |
aagaattatgctctttacacaacagtttttgctcgtttccaactga |
343 |
Q |
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| T |
25358934 |
aagaattatgctctttatccaacagtttttcctcgttcccaactga |
25358979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 14469142 - 14469189
Alignment:
| Q |
298 |
aagaattatgctctttacacaacagtttttgctcgtttccaactgaaa |
345 |
Q |
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| T |
14469142 |
aagaattctgctctttacctaacagtttttgctcatttccaactgaaa |
14469189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 12948103 - 12948053
Alignment:
| Q |
295 |
aaaaagaattatgctctttacacaacagtttttgctcgtttccaactgaaa |
345 |
Q |
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| T |
12948103 |
aaaaagaattatgctctttacctaacagtttttgctcattcccaattgaaa |
12948053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 18146119 - 18146168
Alignment:
| Q |
297 |
aaagaattatgctctttacacaacagtttttgctcgtttccaactgaaaa |
346 |
Q |
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| T |
18146119 |
aaagaattatgctctttactcaatactttttgctcgctttcaactgaaaa |
18146168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 483
Target Start/End: Complemental strand, 12084521 - 12084473
Alignment:
| Q |
435 |
caagaacacgttttatgaacgattcttaacttttcttaattgagtttac |
483 |
Q |
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| T |
12084521 |
caagaacacgttttttggacggttcttgacttttcttaattgattttac |
12084473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 3368084 - 3368136
Alignment:
| Q |
294 |
taaaaagaattatgctctttacacaacagtttttgctcgtttccaactgaaaa |
346 |
Q |
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| T |
3368084 |
taaaaagaattatgctctttacccaacagaaattgctcgctcccaactgaaaa |
3368136 |
T |
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