View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14727_high_1 (Length: 401)
Name: NF14727_high_1
Description: NF14727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14727_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 180 - 385
Target Start/End: Complemental strand, 37123872 - 37123667
Alignment:
| Q |
180 |
gctgctattacgttcataaattcaataatgatagaactgaataggactttgtttttcaattgagtgaagttgagtccacatctcttttttatttatgttg |
279 |
Q |
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| T |
37123872 |
gctgctattacgttcataaattcaataatgatagaactgaataggactttgtttttcaattgagtgaagttgagtccacatctcttttttatttatgttg |
37123773 |
T |
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| Q |
280 |
aaccaaaatgaggtagtgtattagaacgatactgatgggttgacaatatataagttgattacaaatcttgctaatcacagttgggacatttagcaacggt |
379 |
Q |
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| T |
37123772 |
aaccaaaatgaggtagtgtattagaacgatactgatgggttgacaatatataagttgattacaagtcttgctaatcacagttgggacatttagcaacggt |
37123673 |
T |
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| Q |
380 |
ccaaat |
385 |
Q |
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|||||| |
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| T |
37123672 |
ccaaat |
37123667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 37124052 - 37123930
Alignment:
| Q |
8 |
atgaaagattagtaaataattgcattaaagaaaagatgaaagaattgttagagagtgcattttcgaaaagaagaaaaagtgttgaaattttttaaacttt |
107 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37124052 |
atgaaagattagtgaataattgcattaaagaaaagatgaaagaattgttagagagtgcattttcgaaaagaagaaaaagtgttgaaattttttaaacttt |
37123953 |
T |
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| Q |
108 |
taaaattagtggaccttactaac |
130 |
Q |
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| T |
37123952 |
taaaattagtggaccttactaac |
37123930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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