View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14727_high_3 (Length: 298)

Name: NF14727_high_3
Description: NF14727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14727_high_3
NF14727_high_3
[»] chr6 (3 HSPs)
chr6 (27-296)||(21509336-21509605)
chr6 (84-186)||(7143206-7143308)
chr6 (84-186)||(8682397-8682499)
[»] chr2 (2 HSPs)
chr2 (44-243)||(17361468-17361667)
chr2 (149-229)||(23228504-23228584)
[»] scaffold0766 (1 HSPs)
scaffold0766 (47-221)||(4995-5169)
[»] chr3 (2 HSPs)
chr3 (37-229)||(33358518-33358706)
chr3 (131-192)||(26851904-26851965)
[»] chr8 (1 HSPs)
chr8 (37-229)||(11047000-11047189)
[»] chr7 (2 HSPs)
chr7 (162-250)||(19984289-19984377)
chr7 (145-173)||(29958556-29958584)
[»] chr4 (2 HSPs)
chr4 (92-209)||(21119596-21119711)
chr4 (44-115)||(18949514-18949584)
[»] chr1 (1 HSPs)
chr1 (155-223)||(39468491-39468558)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 27 - 296
Target Start/End: Complemental strand, 21509605 - 21509336
Alignment:
Q  27 gtgttagagttacccaatagttttatgttgttgttgtaacatttgaacaaatgacggttttaatcttgtgtttgaatattttgatgtaatctatggataa 126  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21509605 gtgttagggttacccaatagttttatgttgttgttttaacatttgaacaaatgacggttttaatcttgtgtttgaatattttgatgtaacctatggataa 21509506  T
Q  127 cttgtgtttaatttgtacaatctatgtttaatttgtgttatttcataccgtttccattaaagtattttcttataatttgattgaatgcatgtttaaatca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21509505 cttgtgtttaatttgtacaatctatgtttaatttgtgttatttcataccatttccattaaagtattttcttataatttgattgaatgcatgtttaaatca 21509406  T
Q  227 atctgatttgccattttgtgaaaacattatgtatcatccnnnnnnnntcattgattctgcctctgtgctg 296  Q
    |||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||    
T  21509405 atctgatttgccattttgtgaaaacattatgtatcatccaaaaaaaatcattgattatgcctctgtgctg 21509336  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 7143206 - 7143308
Alignment:
Q  84 ttttaatcttgtgtttgaatattttgatgtaatctatggataacttgtgtttaatttgtacaatctatgtttaatttgtgttatttcataccgtttccat 183  Q
    ||||||| || |||| |||||||| | ||||| ||| |||||| |||||||||||| ||||||||||||||||||||||||| |||| || |||||||||    
T  7143206 ttttaattttatgttcgaatatttggttgtaacctacggataatttgtgtttaattcgtacaatctatgtttaatttgtgttgtttcttatcgtttccat 7143305  T
Q  184 taa 186  Q
    |||    
T  7143306 taa 7143308  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 8682397 - 8682499
Alignment:
Q  84 ttttaatcttgtgtttgaatattttgatgtaatctatggataacttgtgtttaatttgtacaatctatgtttaatttgtgttatttcataccgtttccat 183  Q
    ||||||| || |||| |||||||| | ||||| ||| |||||| |||||||||||| ||||||||||||||||||||||||| |||| || |||||||||    
T  8682397 ttttaattttatgttcgaatatttggttgtaacctacggataatttgtgtttaattcgtacaatctatgtttaatttgtgttgtttcttatcgtttccat 8682496  T
Q  184 taa 186  Q
    |||    
T  8682497 taa 8682499  T

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Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 44 - 243
Target Start/End: Complemental strand, 17361667 - 17361468
Alignment:
Q  44 tagttttatgttgttgttgtaacatttgaacaaatgacggttttaatcttgtgtttgaatattttgatgtaatctatggataacttgtgtttaatttgta 143  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| | |||||  ||||||||| ||||||||||||||||    
T  17361667 tagttttatgttgttgttgtaacaattgaacaaatgatgtttttaatcttgtgtttgaatatttcgttgtaacttatggataatttgtgtttaatttgta 17361568  T
Q  144 caatctatgtttaatttgtgttatttcataccgtttccattaaagtattttcttataatttgattgaatgcatgtttaaatcaatctgatttgccatttt 243  Q
    |||  ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17361567 caacttatgtttaatttgtgttatttcatgttttttccattaaagtattttcttataatttgattgaatgcatgtttatatcaatctgatttgccatttt 17361468  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 23228584 - 23228504
Alignment:
Q  149 tatgtttaatttgtgttatttcataccgtttccattaaagtattttcttataatttgattgaatgcatgtttaaatcaatc 229  Q
    |||||||||||| |||||||||||| ||||| | ||||||||| | ||||||||||||||| ||||||||| |||||||||    
T  23228584 tatgtttaatttatgttatttcatatcgtttgccttaaagtatgtgcttataatttgattgtatgcatgttaaaatcaatc 23228504  T

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Target: scaffold0766 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 4995 - 5169
Alignment:
Q  47 ttttatgttgttgttgtaacatttgaacaaatgacggttttaatcttgtgtttgaatattttgatgtaatctatggataacttgtgtttaatttgtacaa 146  Q
    |||| |||| |||||||||| ||||||||||||| | |||||||||| |||||||||||||  || ||| |||||||||| |||||||||||||||||||    
T  4995 ttttgtgttattgttgtaacttttgaacaaatgatgtttttaatcttctgtttgaatatttgaatataacctatggataatttgtgtttaatttgtacaa 5094  T
Q  147 tctatgtttaatttgtgttatttcataccgtttccattaaagtattttcttataatttgattgaatgcatgttta 221  Q
    |||||||| ||||||| ||||||| ||  |||||||||| | ||||||||||||||||   ||||||||||||||    
T  5095 tctatgttaaatttgtattatttcttattgtttccattataatattttcttataattttcatgaatgcatgttta 5169  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 229
Target Start/End: Original strand, 33358518 - 33358706
Alignment:
Q  37 tacccaatagttttatgttgttgttgtaacatttgaacaaatgacggttttaatcttgtgtttgaatattttgatgtaatctatggataacttgtgttta 136  Q
    |||||| |||||||||||||||| |||||||  ||||| | ||| | ||||||| ||||||||||||||||||||||||  ||||||||  |||| | ||    
T  33358518 tacccagtagttttatgttgttgatgtaacaactgaacgattgatgcttttaat-ttgtgtttgaatattttgatgtaacttatggata--ttgt-tcta 33358613  T
Q  137 atttgtacaatctatgtttaatttgtgttatttcataccgtttccattaaagtattttcttataatttgattgaatgcatgtttaaatcaatc 229  Q
     ||| ||||| |||||| |||||||||||||||||||  |||||| | ||||||||| ||||||||||||||| |||||||||||||||||||    
T  33358614 ctttatacaacctatgtgtaatttgtgttatttcatattgtttccctcaaagtatttacttataatttgattgtatgcatgtttaaatcaatc 33358706  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 26851965 - 26851904
Alignment:
Q  131 tgtttaatttgtacaatctatgtttaatttgtgttatttcataccgtttccattaaagtatt 192  Q
    |||||||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||    
T  26851965 tgtttaatttgtacaatctatgtttaatatgtgttgtttcttatcgtttccattaaagtatt 26851904  T

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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 11047189 - 11047000
Alignment:
Q  37 tacccaatagttttatgttgttgttgtaacatttgaacaaatgacggttttaatcttgtgtttgaatattttgatgtaatctatggataacttgtgttta 136  Q
    |||| |||||||||||||| ||| |||||||||| ||||| ||| | ||||||| ||||||| ||||||||||||||||  | ||||||  | ||||| |    
T  11047189 tacctaatagttttatgttattgatgtaacatttaaacaattgatgtttttaat-ttgtgttagaatattttgatgtaacatgtggatag-tggtgtt-a 11047093  T
Q  137 atttgtacaatctatgtttaatttgtgttatttcataccgtttccattaaagtattttcttataatttgattgaatgcatgtttaaatcaatc 229  Q
     |||||||||    ||| ||| || |||||||||||| |||||   | ||||||||| ||| |||||||||||||||||||||||||||||||    
T  11047092 ctttgtacaacacgtgtctaaattatgttatttcatatcgtttatctaaaagtatttgcttgtaatttgattgaatgcatgtttaaatcaatc 11047000  T

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Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 19984377 - 19984289
Alignment:
Q  162 tgttatttcataccgtttccattaaagtattttcttataatttgattgaatgcatgtttaaatcaatctgatttgccattttgtgaaaa 250  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||||| ||  |||||||||||||||| ||||||||||||| ||||||    
T  19984377 tgttatttcgtaccgttttcattaaactattttcttataatttgattaaaaacatgtttaaatcaatcagatttgccattttatgaaaa 19984289  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 29958556 - 29958584
Alignment:
Q  145 aatctatgtttaatttgtgttatttcata 173  Q
    |||||||||||||||||||||||||||||    
T  29958556 aatctatgtttaatttgtgttatttcata 29958584  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 21119596 - 21119711
Alignment:
Q  92 ttgtgtttgaatattttgatgtaatctatggataacttgtgtttaatttgtacaatctatgtttaatttgtgttatttcataccgtttccattaaagtat 191  Q
    |||||||||||||| | ||||||| |||||||||  |||    || ||||||||| |||||||||||||||||| |||||||  |||| | || ||||||    
T  21119596 ttgtgtttgaatatgtggatgtaacctatggata--ttggtgctactttgtacaacctatgtttaatttgtgttttttcatattgtttaccttgaagtat 21119693  T
Q  192 tttcttataatttgattg 209  Q
    || | |||||||||||||    
T  21119694 ttgcatataatttgattg 21119711  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 18949584 - 18949514
Alignment:
Q  44 tagttttatgttgttgttgtaacatttgaacaaatgacggttttaatcttgtgtttgaatattttgatgtaa 115  Q
    ||||||| |||||||  |||||||||||||||| | ||  |||| || ||||||||||||||||||||||||    
T  18949584 tagttttctgttgttaatgtaacatttgaacaatttacattttttat-ttgtgtttgaatattttgatgtaa 18949514  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 39468558 - 39468491
Alignment:
Q  155 taatttgtgttatttcataccgtttccattaaagtattttcttataatttgattgaatgcatgtttaaa 223  Q
    |||||| |||||||||||| |||| |||||||  ||||||||| ||||||||||||| |||||||||||    
T  39468558 taatttatgttatttcatatcgttcccattaac-tattttcttctaatttgattgaaagcatgtttaaa 39468491  T

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