View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14727_high_5 (Length: 246)
Name: NF14727_high_5
Description: NF14727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14727_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 28537645 - 28537402
Alignment:
| Q |
3 |
tcttcttcttcaaatgtggttggtgatggt---------aataataatgagagagaaaatactatatcatcttctgaagctaagaagcttatgagattgg |
93 |
Q |
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| T |
28537645 |
tcttcttcttcaaatgtggttggtgatggtggtaatggtaataataatgagagagaaaatactatatcatcttctgaggctaagaagcttatgagattgg |
28537546 |
T |
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| Q |
94 |
tgaatgttgaaacacttaagatggaacttggtatgggagggaaagaaattatttcctattttgaacttcttcaagcttgtcagagtagtggtattgctag |
193 |
Q |
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| T |
28537545 |
tgaatgttgaaacacttaagatggaacttggtatgggagggaaagaaattatttcctattttgaacttcttcaagcttgtcagagtagtggtattgctag |
28537446 |
T |
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| Q |
194 |
gaatcaagatgaggctgcaaaatttgctaaggttcttgatgatg |
237 |
Q |
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| T |
28537445 |
gaatcaagatgaggctgcaaaatttgctaaggttcttgatgatg |
28537402 |
T |
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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 32397194 - 32397025
Alignment:
| Q |
66 |
tctgaagctaagaagcttatgagattggtgaatgttgaaacacttaagatggaacttggtatgggagggaaagaaattatttcctattttgaacttcttc |
165 |
Q |
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||||||||||||||||||||||||||||||||||| ||| | || |||||| |||||||||||| || |||||| ||||||| ||| ||||||| || |
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| T |
32397194 |
tctgaagctaagaagcttatgagattggtgaatgtggaatctctaaagatgaaacttggtatggatggaaaagaagttatttcttataatgaacttattg |
32397095 |
T |
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| Q |
166 |
aagcttgtcagagtagtggtattgctaggaatcaagatgaggctgcaaaatttgctaaggttcttgatga |
235 |
Q |
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| T |
32397094 |
aagcttgtgagagtatgggtgttgctaggaattctgaagaggctgctgcatatgctaaggttcttgatga |
32397025 |
T |
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