View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14727_low_2 (Length: 397)
Name: NF14727_low_2
Description: NF14727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14727_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 45063446 - 45063088
Alignment:
| Q |
19 |
aatactcaactttgaagataaacaaataacaataacgtcgattaatcttctgtgatattattatcaaactaactcactcaaacacgctattcatcaatgg |
118 |
Q |
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| T |
45063446 |
aatactcaacttcgaagataaacaaactacaataacgtcgattaatcttctgtgatattattatcaaactaactca----aacacgctattcatcaatgg |
45063351 |
T |
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| Q |
119 |
cagaagtcgaaatgcgtgatgccgaaacctttgcattccaggctgagatcaaccaacttctcagtctcatcatcaacactttttacagtaacaaagagat |
218 |
Q |
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| T |
45063350 |
cagaattcgaaatgtgtgacaccgaaacctttgcattccaggctgagatcaaccaacttctcagtctcatcatcaacactttttacagcaacaaagagat |
45063251 |
T |
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| Q |
219 |
tttccttcgtgagctcatcagcaatgcctccgacgtcagtttttcttattcttcattttctatttcttttggtcgcattacattactttagaaagattta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
45063250 |
tttccttcgtgagctcatcagcaatgcctccgacgtcagtttttcttattcttcattttctatttcttttggtcgcattacattactttagaataattga |
45063151 |
T |
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| Q |
319 |
ttctgannnnnnnncattacaggctttggataaaattcgatttgaaagcttaacggacaagag |
381 |
Q |
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| T |
45063150 |
ttctgaatttttttcattacaggctttggataaaattcgatttgaaagcttaacggacaagag |
45063088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 42178458 - 42178355
Alignment:
| Q |
148 |
tttgcattccaggctgagatcaaccaacttctcagtctcatcatcaacactttttacagtaacaaagagattttccttcgtgagctcatcagcaatgcct |
247 |
Q |
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| T |
42178458 |
tttgctttccaggctgagatcaatcaacttctcagtctaatcatcaacaccttttacagtaacaaggagatttttcttcgtgaactcatcagtaatgctt |
42178359 |
T |
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| Q |
248 |
ccga |
251 |
Q |
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|||| |
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| T |
42178358 |
ccga |
42178355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 42167784 - 42167687
Alignment:
| Q |
154 |
ttccaggctgagatcaaccaacttctcagtctcatcatcaacactttttacagtaacaaagagattttccttcgtgagctcatcagcaatgcctccga |
251 |
Q |
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||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| || ||||| |
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| T |
42167784 |
ttccaggctgagatcaatcaacttcttagtctcatcatcaatactttttacagcaacaaggagatttttcttcgtgaactcatcagcaacgcttccga |
42167687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 18619298 - 18619395
Alignment:
| Q |
142 |
gaaacctttgcattccaggctgagatcaaccaacttctcagtctcatcatcaacactttttacagtaacaaagagattttccttcgtgagctcatcag |
239 |
Q |
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||||| || |||||||| |||||||| ||||||||||| || | ||||||||||| || || |||||||| ||||||||| | ||||| |||||||| |
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| T |
18619298 |
gaaacattcgcattccaagctgagattaaccaacttcttagcttgatcatcaacacgttctatagtaacaaggagattttcttgcgtgaactcatcag |
18619395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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