View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14727_low_4 (Length: 280)
Name: NF14727_low_4
Description: NF14727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14727_low_4 |
 | |
|
| [»] scaffold0756 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 38837794 - 38837544
Alignment:
| Q |
20 |
gcaagtcccaaatacatttacaccgagctaaatattgttactcgtttcctcttccatgaagatgatgataagcttcttaaatacttgaatgtggagggaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38837794 |
gcaagtcccaaatacatttacaccgagctaaatattgttactcgtttcctcttccatgaagatgatgataagcttcttaaatacttgaatgaggagggaa |
38837695 |
T |
|
| Q |
120 |
aatccattgaaccaaactggtattttgttttctccgttttttctaagaggctattttgtttgtgattactgacaactaaggacaccgtatacatagaact |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38837694 |
aatccattgaaccaaactggtattttgttttctccgttttttctaagaggctattttgtttgtgattactgacaactaaggacaccgtagacatagaact |
38837595 |
T |
|
| Q |
220 |
gattcaaattttacttccacataggtacatacccatcatacctttgcttct |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38837594 |
gattcaaattttacttccacataggtacatacccatcatacctttggttct |
38837544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 9872506 - 9872377
Alignment:
| Q |
20 |
gcaagtcccaaatacatttacaccgagctaaatattgttactcgtttcctcttccatgaagatgatgataagcttcttaaatacttgaatgtggagggaa |
119 |
Q |
| |
|
|||||| ||| |||||| ||||| ||||||||| ||| || ||| ||||||||||| |||||||||||||||||| | |||||||||| ||| || | |
|
|
| T |
9872506 |
gcaagttccagatacatctacactcagctaaatactgtaacccgtagcctcttccatgctgatgatgataagcttcttgagtacttgaatgaggatggga |
9872407 |
T |
|
| Q |
120 |
aatccattgaaccaaactggtattttgttt |
149 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9872406 |
gatccattgaaccaaactggtattttgttt |
9872377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0756
Description:
Target: scaffold0756; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 171 - 42
Alignment:
| Q |
56 |
gttactcgtttcctcttccatgaagatgatgataagcttcttaaatacttgaatgtggagggaaaatccattgaaccaaactggtattttgttttctccg |
155 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||| |||||||||||| | | || || ||||||||||||||||||||||||| ||||||| |
|
|
| T |
171 |
gttactcgtctcctcttccctgtggatgatgataagcttcttgaatacttgaatgagaatgggaattccattgaaccaaactggtattttg-tttctcct |
73 |
T |
|
| Q |
156 |
ttttttctaagaggctattttgtttgtgatta |
187 |
Q |
| |
|
|| ||| ||| |||||||||| ||||||||| |
|
|
| T |
72 |
ttctttgtaa-tggctattttggttgtgatta |
42 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 20102339 - 20102432
Alignment:
| Q |
56 |
gttactcgtttcctcttccatgaagatgatgataagcttcttaaatacttgaatgtggagggaaaatccattgaaccaaactggtattttgttt |
149 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||| |||||||||||| ||| || || ||| |||||||||||||||||||||||| |
|
|
| T |
20102339 |
gttactcgtctcctcttccctgtggatgatgataagcttcttgaatacttgaatgaggatgggaagtccgttgaaccaaactggtattttgttt |
20102432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 33367797 - 33367668
Alignment:
| Q |
56 |
gttactcgtttcctcttccatgaagatgatgataagcttcttaaatacttgaatgtggagggaaaatccattgaaccaaactggtattttgttttctccg |
155 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||| |||||||||||| ||| || | |||||| |||||||||||||||||| ||||||| |
|
|
| T |
33367797 |
gttactcgtctcctcttccctgtggatgatgataagcttcttgaatacttgaatgaggatgggaggtccattcaaccaaactggtattttg-tttctcct |
33367699 |
T |
|
| Q |
156 |
ttttttctaagaggctattttgtttgtgatta |
187 |
Q |
| |
|
|| ||| ||| |||||||||| ||||||||| |
|
|
| T |
33367698 |
ttctttgtaa-tggctattttggttgtgatta |
33367668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University