View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_high_1 (Length: 779)
Name: NF14728_high_1
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 6435221 - 6434853
Alignment:
| Q |
18 |
taacttaattgataacatggaaaatgatttgctatatgagaaattgtgtaactta-ttgataacatggaaaatgacttgctatatgagaaattatctaga |
116 |
Q |
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| T |
6435221 |
taacttaattgataacatggaaaatgacttgctatatgagaaattgtgcaacttaattgataacatggaaaatgacttgctatatgagaaattatctaga |
6435122 |
T |
|
| Q |
117 |
taatgttttgtatcaaattaagttatttctatgaaatagaataannnnnnnnagtttatcatatatcccctccgctattaccaaggttattttgttcgct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
6435121 |
taatgttttgtatcaaattaagttatttctatgaaatataataattttttttagtttatcatatatcccctccgctattaccaaggttatcttgttcgtt |
6435022 |
T |
|
| Q |
217 |
ccacgacaggataagaaggctctacttatgagttaggagaaggaaaggcgtcgaaggaatgataataagnnnnnnntagaaaaatcttccatattttttg |
316 |
Q |
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| T |
6435021 |
ccacggcaggataagaaggttttacttgtgagttagaagaaggaaaggcgttgaggggaggataataagaaaaaaatagaaaaatcttccatattttttg |
6434922 |
T |
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| Q |
317 |
tttgctcatgtgataaatgaatgtgtatcaataatatatttttaagttcgagactgttataaacacata |
385 |
Q |
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| T |
6434921 |
tttgctcatgtgataaatgaatgtgtatcaataatatatttttaagtttgagagtgttataaacacata |
6434853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 565 - 770
Target Start/End: Complemental strand, 6434640 - 6434434
Alignment:
| Q |
565 |
attcattcctactttgctcaatctcaatcggtaaattactattgtgttagttttttaaacaattcttcataaccataatttattaaccagtttaagtcaa |
664 |
Q |
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| T |
6434640 |
attcattcctactttgctcaatctcaattggtaaattactattgtgttagttttttaaacaattcttcataaccataatttattaaccagtttaagtcaa |
6434541 |
T |
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| Q |
665 |
agtagtttgtttcattatctgtactttaggacagtggtggttcatgcgtgag-nnnnnnnngtattgcaaattgtcgtgatttgaagtaccagtacaatg |
763 |
Q |
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| T |
6434540 |
agtagtttgtttcattttctgtactttaggacagtggtggttcatccgtgagttttgttttgtattgcaaattgtcgtgatttgaagtaccagtacaatg |
6434441 |
T |
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| Q |
764 |
atgatgt |
770 |
Q |
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||||||| |
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| T |
6434440 |
atgatgt |
6434434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 462 - 558
Target Start/End: Complemental strand, 6434844 - 6434748
Alignment:
| Q |
462 |
aaaaagactttgtgctattatgaaaaataaaactccatatttatgttgggggactgtcccttttttcatttccatttacttctttcttttacccaaa |
558 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
6434844 |
aaaaagactttgtgctattttgaaaaataaaactccatatttaagttgggggactgtcccttctttcatttccatttacttctttgttttacccaaa |
6434748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 215; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 62 - 397
Target Start/End: Complemental strand, 29430092 - 29429757
Alignment:
| Q |
62 |
tgtgtaactta-ttgataacatggaaaatgacttgctatatgagaaattatctagataatgttttgtatcaaattaagttatttctatgaaatagaataa |
160 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29430092 |
tgtgtaacttaattgataacatggaaaatgacttgctaaatgagaaattatctagataatattttgtatcaaattaagttatttctatgaaatagaataa |
29429993 |
T |
|
| Q |
161 |
nnnnnnnnagtttatcatatatcccctccgctattaccaaggttattttgttcgctccacgacaggataagaaggctctacttatgagttaggagaagga |
260 |
Q |
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| T |
29429992 |
ttttttttggtttatcataaatcccctccgctattatcaaggttatcttgttcgctccacgacaggataagaaggctctacttgtgagttaggagaagga |
29429893 |
T |
|
| Q |
261 |
aaggcgtcgaaggaatgataataagnnnnnnntagaaaaatcttccatattttttgtttgctcatgtgataaatgaatgtgtatcaataatatattttta |
360 |
Q |
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||||||| ||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29429892 |
aaggcgttgaaggaaggataataag-aaaaaatagaaatatctttcatattttttgtttgctcatgtgataaatgaatgtgtatcaatactatattttta |
29429794 |
T |
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| Q |
361 |
agttcgagactgttataaacacatattagtattagat |
397 |
Q |
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|||| |||| ||||||||||||||| | ||||||||| |
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| T |
29429793 |
agtttgagagtgttataaacacatacttgtattagat |
29429757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 29430088 - 29430044
Alignment:
| Q |
18 |
taacttaattgataacatggaaaatgatttgctatatgagaaatt |
62 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
29430088 |
taacttaattgataacatggaaaatgacttgctaaatgagaaatt |
29430044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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