View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14728_high_10 (Length: 479)

Name: NF14728_high_10
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14728_high_10
NF14728_high_10
[»] chr5 (13 HSPs)
chr5 (148-361)||(30711547-30711763)
chr5 (14-114)||(30675600-30675701)
chr5 (19-100)||(30711758-30711839)
chr5 (171-261)||(30659450-30659547)
chr5 (123-165)||(30675186-30675228)
chr5 (125-165)||(30062167-30062207)
chr5 (127-165)||(30049582-30049620)
chr5 (26-61)||(30336894-30336929)
chr5 (26-61)||(30485103-30485138)
chr5 (121-165)||(30488148-30488192)
chr5 (121-165)||(30492333-30492377)
chr5 (19-98)||(30751347-30751425)
chr5 (131-165)||(30751598-30751632)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 148 - 361
Target Start/End: Complemental strand, 30711763 - 30711547
Alignment:
Q  148 acgtggccgacagaataaaacattgtcaaagtaaggcataggtccatgtttttcttcatggggcaggtcatatgaccatgtgtctctctcttttaataaa 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30711763 acgtggccgacagaataaaacattgtcaaagtaaggcataggtccatgtttttcttcatggggcaggtcatatgaccatgtgtctctgtcttttaataaa 30711664  T
Q  248 acattgtcattttttaagattctatttcttgaactatagaa--ttactattttgttttaattgtataaatac---tattttgttttatggatgagttaac 342  Q
    |||||||||||||||||||||||||||||||||||||||||  | |||| ||  ||| |||||||| |||||   |||||||||||||||||||||||||    
T  30711663 acattgtcattttttaagattctatttcttgaactatagaaattaactaatt--tttaaattgtatgaatactagtattttgttttatggatgagttaac 30711566  T
Q  343 tatgtgattatccgtaacc 361  Q
    ||| |||||||||||||||    
T  30711565 tatatgattatccgtaacc 30711547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 30675701 - 30675600
Alignment:
Q  14 atgaaggagacttttgaaaataaatgcaatgaaagtagaaagtcagcaaagttgg-tggtcaataattgtgagcaaacgttcacgtgggacgcacatttt 112  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  30675701 atgaaggagacctttgagaataaatgcaatgaaagtagaaagtcagcaaagtagggtggtcaataattgtgagcaaacgttcacgtgggacgcacatttt 30675602  T
Q  113 ca 114  Q
    ||    
T  30675601 ca 30675600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 30711839 - 30711758
Alignment:
Q  19 ggagacttttgaaaataaatgcaatgaaagtagaaagtcagcaaagttggtggtcaataattgtgagcaaacgttcacgtgg 100  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  30711839 ggagacctttgaaaataaatgcaatgaaagtagaaagtcagaaaagtaggtggtcaataattgtgagcaaacgttcacgtgg 30711758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 30659547 - 30659450
Alignment:
Q  171 tgtcaaagtaaggcataggtccatgtttttcttcat-ggggcaggtca------tatgaccatgtgtctctctcttttaataaaacattgtcattttt 261  Q
    |||||||||||| ||| ||||||||||||||||||| |||||| ||||      |||||| |||| |||||||||||||| |||||||||||||||||    
T  30659547 tgtcaaagtaagacattggtccatgtttttcttcatgggggcatgtcatatgagtatgactatgtatctctctcttttaaaaaaacattgtcattttt 30659450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 30675228 - 30675186
Alignment:
Q  123 tgattgatccactttaacctttaaaacgtggccgacagaataa 165  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30675228 tgattgatccactttaacctttaaaacgtggccgacagaataa 30675186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 30062167 - 30062207
Alignment:
Q  125 attgatccactttaacctttaaaacgtggccgacagaataa 165  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30062167 attgatccactttaacctttaaaacgtggccgacagaataa 30062207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 30049582 - 30049620
Alignment:
Q  127 tgatccactttaacctttaaaacgtggccgacagaataa 165  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30049582 tgatccactttaacctttaaaacgtggccgacagaataa 30049620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 30336929 - 30336894
Alignment:
Q  26 tttgaaaataaatgcaatgaaagtagaaagtcagca 61  Q
    ||||||||||||||||||||||||||||||||||||    
T  30336929 tttgaaaataaatgcaatgaaagtagaaagtcagca 30336894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 30485103 - 30485138
Alignment:
Q  26 tttgaaaataaatgcaatgaaagtagaaagtcagca 61  Q
    ||||||||||||||||||||||||||||||||||||    
T  30485103 tttgaaaataaatgcaatgaaagtagaaagtcagca 30485138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 30488148 - 30488192
Alignment:
Q  121 tttgattgatccactttaacctttaaaacgtggccgacagaataa 165  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||    
T  30488148 tttgattgatccactttaaccattaatacgtggccgacaaaataa 30488192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 30492333 - 30492377
Alignment:
Q  121 tttgattgatccactttaacctttaaaacgtggccgacagaataa 165  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||    
T  30492333 tttgattgatccactttaaccattaatacgtggccgacaaaataa 30492377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 30751347 - 30751425
Alignment:
Q  19 ggagacttttgaaaataaatgcaatgaaagtagaaagtcagcaaagttggtggtcaataattgtgagcaaacgttcacgt 98  Q
    |||||| ||||| |||||| ||||||  ||||| || ||||||| || |||| ||||||||||||||||||| |||||||    
T  30751347 ggagacctttgagaataaaagcaatggtagtaggaactcagcaa-gtaggtgttcaataattgtgagcaaacattcacgt 30751425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 30751598 - 30751632
Alignment:
Q  131 ccactttaacctttaaaacgtggccgacagaataa 165  Q
    ||||||||||| |||||||||||||||||||||||    
T  30751598 ccactttaaccattaaaacgtggccgacagaataa 30751632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University