View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14728_high_11 (Length: 441)
Name: NF14728_high_11
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 4130541 - 4130132
Alignment:
| Q |
16 |
aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4130541 |
aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcat |
4130442 |
T |
|
| Q |
116 |
ttgacaatataatgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttgttataatatatatgctctaaatgtagtggttata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4130441 |
ttgacaatataatgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttattataatatatatgctctaaatgtagtggttata |
4130342 |
T |
|
| Q |
216 |
tgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaataa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4130341 |
tgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaataa |
4130242 |
T |
|
| Q |
316 |
cagcttttatcaaaatgaggattctcttagccttgttggctttgtaagtctatgtaatccatgtctctattacttaatttgacaaaaagtttagcaatac |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4130241 |
cagcttttatcaaaatgaggattctcttagccttgttggctttgtaagtctatgtaatccatgtctctattactttatttgacaaaaagtttagcaatac |
4130142 |
T |
|
| Q |
416 |
atgttcatca |
425 |
Q |
| |
|
|||||||||| |
|
|
| T |
4130141 |
atgttcatca |
4130132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 4120456 - 4120112
Alignment:
| Q |
17 |
atatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcatt |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |||||| ||||| |
|
|
| T |
4120456 |
atatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaatcctatctcatt |
4120357 |
T |
|
| Q |
117 |
tgacaatataatgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttgttataatatatatgctctaaatgtagtggttatat |
216 |
Q |
| |
|
||| |||| |||| || |||||| ||||||| | | ||| | ||||| ||| | |||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
4120356 |
gaacattatattgttgggattattaatgctacaaatgaattgtttaatcattactcctgt---tattataacatatatgctttaaatgcagtggttatat |
4120260 |
T |
|
| Q |
217 |
gccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaataac |
316 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||| |
|
|
| T |
4120259 |
gccgccagaatatgcaatggaggggcttttctctgagaaatcagatgtatatagctttggggttttattgctagagattgtcagtgggcgaagaaatacg |
4120160 |
T |
|
| Q |
317 |
agcttttatcaaaatgaggattctcttagccttgttggctttgtaagt |
364 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||| |||||||||||| |
|
|
| T |
4120159 |
agcttttatcacagcgaggattcacttagccttgtaggctttgtaagt |
4120112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 4150905 - 4150553
Alignment:
| Q |
16 |
aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcat |
115 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| |||| |
|
|
| T |
4150905 |
aatatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatctcat |
4150806 |
T |
|
| Q |
116 |
ttgacaatataatgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttg---ttataatat-atatgctctaaatgtagtggt |
211 |
Q |
| |
|
|||| | ||||||||| ||| || | |||||||| |||| ||| || | | | |||||| ||||| || ||||| |||||||| |||||| |
|
|
| T |
4150805 |
ttgatattataatgttggaat---tagtgttacaaatgagtggtttaattttattttttttacttggggttatagtaacatatgttctaaatgcagtggt |
4150709 |
T |
|
| Q |
212 |
tatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaa |
311 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| || ||||||||||| ||||||||||| ||| ||||||| |||||||| |||||| |||||| |
|
|
| T |
4150708 |
tatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgttagcggaagaagaa |
4150609 |
T |
|
| Q |
312 |
ataacagcttttatcaaaatgaggattctcttagccttgttggctttgtaagtcta |
367 |
Q |
| |
|
||| ||||||| ||| | |||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
4150608 |
atagtagcttttctcatcacgaggatactcttagccttgtaggctttgtaagtcta |
4150553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 192 - 364
Target Start/End: Complemental strand, 4159729 - 4159557
Alignment:
| Q |
192 |
tatgctctaaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctaga |
291 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
4159729 |
tatgctctaaatgcagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttggagttttattgttaga |
4159630 |
T |
|
| Q |
292 |
gattgtaagcggacgaagaaataacagcttttatcaaaatgaggattctcttagccttgttggctttgtaagt |
364 |
Q |
| |
|
|||||| ||||| |||||||| | |||||||| || || || |||||||||||||||||||||||||||||| |
|
|
| T |
4159629 |
gattgttagcggccgaagaaacagtagcttttaccacaacgaagattctcttagccttgttggctttgtaagt |
4159557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 198 - 388
Target Start/End: Complemental strand, 4142704 - 4142514
Alignment:
| Q |
198 |
ctaaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgt |
297 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||| || || ||||||||||||||| |||| |
|
|
| T |
4142704 |
ctaaatgcagtggttatatgccacctgaatatgcaatggaggggcttttctcagagaaatcagatgtctatagtttcggagttttattgctagagcttgt |
4142605 |
T |
|
| Q |
298 |
aagcggacgaagaaataacagcttttatcaaaatgaggattctcttagccttgttggctttgtaagtctatgtaatccatgtctctattac |
388 |
Q |
| |
|
|| ||||||||||||| ||||||||||| | |||||||||||||||||||| |||||||||||| ||| || || |||||| |||||| |
|
|
| T |
4142604 |
tagtggacgaagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatagtcgatgtctttattac |
4142514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 4142893 - 4142806
Alignment:
| Q |
16 |
aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagta |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142893 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagta |
4142806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 4159922 - 4159837
Alignment:
| Q |
16 |
aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
4159922 |
aatatcagactttggtttagctagaattgttaaaggaggagaagatgatgaaacaaacacaaatagggttgttggaacttagtaag |
4159837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 20062461 - 20062380
Alignment:
| Q |
201 |
aatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgtttt |
282 |
Q |
| |
|
|||| |||||||||||| | |||||||| |||||| |||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
20062461 |
aatgcagtggttatatgtctcctgaatacgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgtttt |
20062380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 20294824 - 20294920
Alignment:
| Q |
201 |
aatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgt |
297 |
Q |
| |
|
|||| ||||| |||||| | ||||||||||||||| ||| | || ||||||||||||||||| | ||||||||||||||| ||||||||||||| |
|
|
| T |
20294824 |
aatgcagtggctatatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttgatgctagagattgt |
20294920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 20303863 - 20303943
Alignment:
| Q |
199 |
taaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgt |
279 |
Q |
| |
|
|||||| ||||| |||||| | |||||||| |||||| | |||||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
20303863 |
taaatgcagtggctatatgtctcctgaatacgcaatgcgaggacttttttcagagaaatcagatgtttttagctttggtgt |
20303943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 363
Target Start/End: Original strand, 20279703 - 20279827
Alignment:
| Q |
239 |
ggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaataacagcttttatcaaaatgaggatt |
338 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||||||| | |||||||| || ||||| ||||||| ||||||||| | |||||| || |
|
|
| T |
20279703 |
ggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcgttagcgggagaagaaactcaagcttttatgacaatgagcatg |
20279802 |
T |
|
| Q |
339 |
ctcttagccttgttggctttgtaag |
363 |
Q |
| |
|
|||| || ||||| || |||||||| |
|
|
| T |
20279803 |
ctctgagtcttgtaggatttgtaag |
20279827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 20289417 - 20289529
Alignment:
| Q |
200 |
aaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaa |
299 |
Q |
| |
|
||||| ||||||||||| | || ||||| |||||| ||||| || ||||||||||||||||| | ||||||||||||||| || ||||||||| | | |
|
|
| T |
20289417 |
aaatgcagtggttatatatctcccgaatacgcaatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttgttactagagattatta |
20289516 |
T |
|
| Q |
300 |
gcggacgaagaaa |
312 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
20289517 |
gcgggagaagaaa |
20289529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 20243796 - 20243907
Alignment:
| Q |
201 |
aatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaag |
300 |
Q |
| |
|
|||||||||| || ||| | ||||||||||||||| ||| | || ||||||||||||||||| | |||||||||||| || | ||||||||||| | |
|
|
| T |
20243796 |
aatgtagtggctacatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgctactagagattgttat |
20243895 |
T |
|
| Q |
301 |
cggacgaagaaa |
312 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
20243896 |
cggaagaagaaa |
20243907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 20231744 - 20231835
Alignment:
| Q |
221 |
cctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaa |
312 |
Q |
| |
|
||||||||||||||| ||| | || ||||||||||||||||| | |||||||||||| || | ||||||||||| | |||| ||||||| |
|
|
| T |
20231744 |
cctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgctactagagattgttatcggaagaagaaa |
20231835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 20167977 - 20167901
Alignment:
| Q |
206 |
agtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgtttt |
282 |
Q |
| |
|
||||| |||||| | || || ||||||||| ||||| || ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
20167977 |
agtggctatatgtctcccgagtatgcaatgcaaggactattttcagagaaatcagatgtgtttagctttggtgtttt |
20167901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 40823734 - 40823639
Alignment:
| Q |
200 |
aaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagatt |
295 |
Q |
| |
|
||||| || ||||||||| | ||||||||||| ||| ||||| || ||||||||||||||||| | ||||||||||||||| | ||||||||| |
|
|
| T |
40823734 |
aaatgcagcggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttgatactagagatt |
40823639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 28433416 - 28433476
Alignment:
| Q |
254 |
aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaata |
314 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||| || |||||||| |||||||| |
|
|
| T |
28433416 |
aaatcagatgtatttagctttggtgtattattgctagaaataataagcggaaaaagaaata |
28433476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 1050700 - 1050751
Alignment:
| Q |
254 |
aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggac |
305 |
Q |
| |
|
||||| ||||||| ||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
1050700 |
aaatctgatgtatttagctttggcgtattattgctagagattgtaagtggac |
1050751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 1077602 - 1077653
Alignment:
| Q |
254 |
aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggac |
305 |
Q |
| |
|
||||| ||||||| ||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
1077602 |
aaatctgatgtatttagctttggcgtattattgctagagattgtaagtggac |
1077653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 1091481 - 1091532
Alignment:
| Q |
254 |
aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggac |
305 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
1091481 |
aaatctgatgtatttagctttggtgtattattactagagattgtaagtggac |
1091532 |
T |
|
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 2698310 - 2698252
Alignment:
| Q |
254 |
aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaa |
312 |
Q |
| |
|
||||||||||||||||| |||||||| ||| | ||||||||||| ||||| || ||||| |
|
|
| T |
2698310 |
aaatcagatgtatatagttttggtgtattactactagagattgtgagcggccgcagaaa |
2698252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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