View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_high_28 (Length: 299)
Name: NF14728_high_28
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_high_28 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 33993259 - 33992963
Alignment:
| Q |
1 |
atgcttgtccacatagtgtttctaatgcacttgccatacccaactacaattttcaatttgcacnnnnnnncattgtaaataagtttagcttattttttca |
100 |
Q |
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| T |
33993259 |
atgcttgtccacatagtgtttctaatgcacttgccatacccaactacaattttcaatttgcacaaaaaaacattgtaaataagtttagcttattttttca |
33993160 |
T |
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| Q |
101 |
tatgcaagatatgaatgcannnnnnnn--gacaagaaaagaaagaataacaagatacgaatacataaagattatttatcaaagcaaaattttcataaatt |
198 |
Q |
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| T |
33993159 |
tatgcaagatacgaatacattttttttttgacaaaaaaagaa----taacaagatacgaatacataaagattagttatcaaagcaaaattttcataaatt |
33993064 |
T |
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| Q |
199 |
gcaatcaaccgcaattgtacttgtgacatatggtttttgatatctataatactattgcgattgaggtagcataggtgataagatatgatttcataatgat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
33993063 |
gcaatcaaccgcaattgtacttgtgacatatggtttttgatatctataatactattgcgattgaggtagcataggtgataagatatgaatacataatgat |
33992964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33983586 - 33983525
Alignment:
| Q |
1 |
atgcttgtccacatagtgtttctaatgcacttgccatacccaactacaattttcaatttgca |
62 |
Q |
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| T |
33983586 |
atgcttgtccacatagtgtttccaatgcacttgccatacctagctacaattttcaatttgca |
33983525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 33992984 - 33992862
Alignment:
| Q |
149 |
aagatacgaatacataaagattatttatcaaagcaaaattttcataaattgcaatcaaccgcaattgtacttgtgacat-atggtttttgatatctataa |
247 |
Q |
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| T |
33992984 |
aagatatgaatacataatgattattaattaaagcaagattttcatacgctgccctggatcgcaattgtatttgtgacatcaaggtttttgatgtctataa |
33992885 |
T |
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| Q |
248 |
tactattgcgattgaggtagcat |
270 |
Q |
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| T |
33992884 |
tacaattgcgattgaggtagcat |
33992862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9237884 - 9237920
Alignment:
| Q |
1 |
atgcttgtccacatagtgtttctaatgcacttgccat |
37 |
Q |
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| T |
9237884 |
atgcttgtccacaaagtgtttccaatgcacttgccat |
9237920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14092205 - 14092169
Alignment:
| Q |
1 |
atgcttgtccacatagtgtttctaatgcacttgccat |
37 |
Q |
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| T |
14092205 |
atgcttgtccacataaagtttctaatgcacttgccat |
14092169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15158610 - 15158646
Alignment:
| Q |
1 |
atgcttgtccacatagtgtttctaatgcacttgccat |
37 |
Q |
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| T |
15158610 |
atgcttgtccacaaagtgtttccaatgcacttgccat |
15158646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37264306 - 37264262
Alignment:
| Q |
1 |
atgcttgtccacatagtgtttctaatgcacttgccatacccaact |
45 |
Q |
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| T |
37264306 |
atgcttgtccacatagtgtctcaactgcacttcccatacccaact |
37264262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6588298 - 6588342
Alignment:
| Q |
1 |
atgcttgtccacatagtgtttctaatgcacttgccatacccaact |
45 |
Q |
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| T |
6588298 |
atgcttgcccacatagtgtctccaatgcacttcccatacccaact |
6588342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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