View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_high_33 (Length: 288)
Name: NF14728_high_33
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 272
Target Start/End: Original strand, 5475029 - 5475289
Alignment:
| Q |
12 |
ataaggagctagctatcatatagatatatgcatatataagatctaaatttggaagcattgaatcatgcaaattattaacattttggaaataaatgtaatg |
111 |
Q |
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| T |
5475029 |
ataaggagctagctatcatatagatatatgcatatataagatctaaatttggaagcattgaatcatgcaaattattaacattttggaaataaatgtaatg |
5475128 |
T |
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| Q |
112 |
catgcaattgatattcaatattcataatcacggcaactataaatcttataaaatcatcataatgtaataataacaaggtacgactaagcttaaagtgata |
211 |
Q |
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| T |
5475129 |
catgcaattgatattcaatattcataatcacggcaacaataaatcttataaaatcatcataatgtaataataacaaggtacgactaagcttaaagtgata |
5475228 |
T |
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| Q |
212 |
ctataaaaagaaaaatctttgtcggggagatttactttatattgtaagatatacatgtgat |
272 |
Q |
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| T |
5475229 |
ctataaaaagaaaaatctttgtcggggagatttgctttatattgtaagatatacatgtgat |
5475289 |
T |
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