View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14728_high_37 (Length: 266)

Name: NF14728_high_37
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14728_high_37
NF14728_high_37
[»] chr3 (4 HSPs)
chr3 (38-154)||(3522267-3522383)
chr3 (1-33)||(12918492-12918524)
chr3 (5-33)||(3528609-3528637)
chr3 (1-33)||(12540065-12540097)
[»] chr5 (1 HSPs)
chr5 (53-251)||(23048330-23048527)
[»] chr7 (4 HSPs)
chr7 (1-33)||(37538118-37538150)
chr7 (1-33)||(38294197-38294229)
chr7 (1-33)||(33059350-33059382)
chr7 (1-33)||(36301892-36301924)
[»] chr4 (2 HSPs)
chr4 (1-33)||(9621357-9621389)
chr4 (1-33)||(55582077-55582109)
[»] chr2 (3 HSPs)
chr2 (1-33)||(19196966-19196998)
chr2 (1-33)||(36733114-36733146)
chr2 (1-33)||(36737267-36737299)
[»] scaffold0394 (1 HSPs)
scaffold0394 (1-33)||(8497-8529)
[»] scaffold0379 (2 HSPs)
scaffold0379 (1-33)||(9329-9361)
scaffold0379 (1-33)||(16521-16553)
[»] scaffold0230 (1 HSPs)
scaffold0230 (1-33)||(8110-8142)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-33)||(15185-15217)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-33)||(83236-83268)
[»] scaffold0004 (3 HSPs)
scaffold0004 (1-33)||(64860-64892)
scaffold0004 (1-33)||(67470-67502)
scaffold0004 (1-33)||(74310-74342)
[»] chr8 (2 HSPs)
chr8 (1-33)||(5079759-5079791)
chr8 (1-33)||(23885396-23885428)
[»] chr6 (4 HSPs)
chr6 (1-33)||(1817797-1817829)
chr6 (1-33)||(10444946-10444978)
chr6 (1-33)||(29044053-29044085)
chr6 (1-33)||(35056136-35056168)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 3522383 - 3522267
Alignment:
Q  38 caatcatacattttctataatcggcttattttgcattctgtacttttacaatttgtttgtgtttctgtagatactatttgagctgttagccaagggtgga 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3522383 caatcatacattttctataatcggcttattttgcattctgtacttttacaatttgtttgtgtttctgtagatactatttgagttgttagccaagggtgga 3522284  T
Q  138 agtgtcaaggaactcat 154  Q
    |||||||||||||||||    
T  3522283 agtgtcaaggaactcat 3522267  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12918524 - 12918492
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||||||||||||||||||||||||    
T  12918524 tcatcaacaatacttcacataattccaactaca 12918492  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 3528637 - 3528609
Alignment:
Q  5 caacaatacttcacataattccaactaca 33  Q
    |||||||||||||||||||||||||||||    
T  3528637 caacaatacttcacataattccaactaca 3528609  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12540065 - 12540097
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  12540065 tcatcaacaatagttcacataattccaactaca 12540097  T

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Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 23048527 - 23048330
Alignment:
Q  53 tataatcggcttattttgcattctgtacttttacaatttgtttgtgtttctgtagatactatttgagctgttagccaagggtggaagtgtcaaggaactc 152  Q
    |||||| || ||| ||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  23048527 tataatgggtttactttgcattctgtactttcaca-tttgtttgtgtctttgtagatactatttgagctgttagccgagggtggaagtgtcaaggaaatc 23048429  T
Q  153 attgaaataaatgacttggttcaggttagtagtagtatcaacaattattgaattttttacgagtttatatataattgagtcaacattccgcatgaattt 251  Q
    || ||||  || ||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||| ||| || || ||||||||||    
T  23048428 atagaaaagaaggacttggttcaggttagtattagtatcaacaattattgaaatttttaccagtttgtatataattgactcagcactctgcatgaattt 23048330  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37538118 - 37538150
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||||||||||||||||||||||||    
T  37538118 tcatcaacaatacttcacataattccaactaca 37538150  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38294197 - 38294229
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||||||||||||||||||||||||    
T  38294197 tcatcaacaatacttcacataattccaactaca 38294229  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33059350 - 33059382
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    ||||||||||| |||||||||||||||||||||    
T  33059350 tcatcaacaatgcttcacataattccaactaca 33059382  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36301924 - 36301892
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    ||||||||||||||||||||||||| |||||||    
T  36301924 tcatcaacaatacttcacataattctaactaca 36301892  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9621357 - 9621389
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||||||||||||||||||||||||    
T  9621357 tcatcaacaatacttcacataattccaactaca 9621389  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 55582077 - 55582109
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  55582077 tcatcaacaatagttcacataattccaactaca 55582109  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19196998 - 19196966
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||||||||||||||||||||||||    
T  19196998 tcatcaacaatacttcacataattccaactaca 19196966  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36733146 - 36733114
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  36733146 tcatcaacaatagttcacataattccaactaca 36733114  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36737299 - 36737267
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  36737299 tcatcaacaatagttcacataattccaactaca 36737267  T

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Target: scaffold0394 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8529 - 8497
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    ||||||||||| |||||||||||||||||||||    
T  8529 tcatcaacaatgcttcacataattccaactaca 8497  T

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Target: scaffold0379 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9329 - 9361
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  9329 tcatcaacaatagttcacataattccaactaca 9361  T

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Target: scaffold0379; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16521 - 16553
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  16521 tcatcaacaatagttcacataattccaactaca 16553  T

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Target: scaffold0230 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8142 - 8110
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  8142 tcatcaacaatagttcacataattccaactaca 8110  T

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Target: scaffold0056 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15185 - 15217
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  15185 tcatcaacaatagttcacataattccaactaca 15217  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 83268 - 83236
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    ||||||||||| |||||||||||||||||||||    
T  83268 tcatcaacaatgcttcacataattccaactaca 83236  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 64860 - 64892
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  64860 tcatcaacaatagttcacataattccaactaca 64892  T

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Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 67502 - 67470
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  67502 tcatcaacaatagttcacataattccaactaca 67470  T

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Target: scaffold0004; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 74310 - 74342
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  74310 tcatcaacaatagttcacataattccaactaca 74342  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5079759 - 5079791
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  5079759 tcatcaacaatagttcacataattccaactaca 5079791  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 23885396 - 23885428
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||||||||||||||||| ||||||    
T  23885396 tcatcaacaatacttcacataattcccactaca 23885428  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1817797 - 1817829
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    ||||||| |||||||||||||||||||||||||    
T  1817797 tcatcaaaaatacttcacataattccaactaca 1817829  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10444946 - 10444978
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||||||||||||||| ||||||||    
T  10444946 tcatcaacaatacttcacataatttcaactaca 10444978  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29044053 - 29044085
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  29044053 tcatcaacaatagttcacataattccaactaca 29044085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35056136 - 35056168
Alignment:
Q  1 tcatcaacaatacttcacataattccaactaca 33  Q
    |||||||||||||||||||||||| ||||||||    
T  35056136 tcatcaacaatacttcacataatttcaactaca 35056168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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