View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_high_39 (Length: 258)
Name: NF14728_high_39
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_high_39 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 53288641 - 53288398
Alignment:
| Q |
16 |
aatatattaaatcaacatcatgcaaaatatctatcacaaaaatcaatatctatnnnnnnnnn-ttgcaatcttactaacaaaaacattatctgttcaaca |
114 |
Q |
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| T |
53288641 |
aatatattaaatcaacatcatgcaaaatatctatcacaaaaatcaatatctataaaaaaaaaattgcaatcttactaacaaaaacattatctgttcaaca |
53288542 |
T |
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| Q |
115 |
tttcaaaatagattataaaataaataacttcttgaccatttgtttatgcatacaattgtctctatctttttaagtccacatatttaaatacgtcttttta |
214 |
Q |
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| T |
53288541 |
tttcaaaatagattataaaataaataacttcttgaccatttgtttatgcatacaattgtctctatctttttaagttcacatatttaaatacgtctttcta |
53288442 |
T |
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| Q |
215 |
ataatttttcaacaacttatcaatgtaaatttttaaaaatgtat |
258 |
Q |
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| T |
53288441 |
ataatttttcaacaacttatcaatgtaaatttttaaaaatgtat |
53288398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 55288055 - 55288295
Alignment:
| Q |
17 |
atatattaaatcaacatcatgcaaaatatctatcacaaaaatcaatatctatnnnnnnnnnttgcaatcttactaacaaaaacattatctgttcaacatt |
116 |
Q |
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| T |
55288055 |
atatattaaatcaacatcatgcaaaatatctaccacaaaaatcaacatctataaaaaaaa-ttgcaatcttactaacaaaaacattatatgttcaacatt |
55288153 |
T |
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| Q |
117 |
tcaaaatagattataaaataaataacttcttgaccatttgtttatgcatacaattgtctctatctttttaagtccacatatttaaatacgtctttttaat |
216 |
Q |
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| T |
55288154 |
tcaaaatagattataaaataaataacttcttgaccatttgtttatgcatacaattgtctctatctttttaagttcacatatttaaatacgtctttttaat |
55288253 |
T |
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| Q |
217 |
aatttttcaacaacttatcaatgtaaatttttaaaaatgtat |
258 |
Q |
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| T |
55288254 |
aatttttcaacaacttatcaatgtaaatttttaaaaatgtat |
55288295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 11841171 - 11841412
Alignment:
| Q |
17 |
atatattaaatcaacatcatgcaaaatatctatcacaaaaatcaatatctatnnnnnnnnnttgcaatcttactaacaaaaacattatctgttcaacatt |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
11841171 |
atatattaaatcaacatcatgcaaaatatctaccacaaaaatcaatatctataaaaaaaaattgcaatcttactaacaaaaacattatctgttaaacatt |
11841270 |
T |
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| Q |
117 |
tcaaaatagattataaaataaataacttcttgaccatttgtttatgcatacaattgtctctatctttttaagtccacatatttaaatacgtctttttaat |
216 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11841271 |
tcaaaatagattataaaataagtaacttcttgacaatttgtttatgcatacaattgtctctatctttttaagttcacatatttaaatacgtctttttaat |
11841370 |
T |
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| Q |
217 |
aatttttcaacaacttatcaatgtaaatttttaaaaatgtat |
258 |
Q |
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| T |
11841371 |
aatttttcaacaacttatcaatgtaaatttttaaaaatgtat |
11841412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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