View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_high_40 (Length: 254)
Name: NF14728_high_40
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 47636891 - 47636656
Alignment:
| Q |
1 |
ctgtttcatagaaagagttgctcttcttgccacttataatctccataacgaggactccaaaactgtatacatcagactttatcgagaactctccatgcat |
100 |
Q |
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| T |
47636891 |
ctgtttcatagaaagagttgctcttcttgccacttataatctccataacgaggactccaaaactgtatacatcagactttatcgagaactctccatgcat |
47636792 |
T |
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| Q |
101 |
tgcatactccggagacatgtaaccacttaaacacaaacacatatttatcattgctataaaacactatcatccacaaaaaggacaagtacttcaacaaata |
200 |
Q |
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| T |
47636791 |
tgcatactccggagacatgtaaccacttaaacacaaacacatatttatcattgctataaaacactatcatccacaaaaaggacaagtactt--------- |
47636701 |
T |
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| Q |
201 |
tatgtcgcatatataaacatgtacttactatgtgcctatgattct |
245 |
Q |
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| T |
47636700 |
tatgtcgcatatataaacatgtacttactatgtgcctacgattct |
47636656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 47627698 - 47627663
Alignment:
| Q |
92 |
tccatgcattgcatactccggagacatgtaaccact |
127 |
Q |
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| T |
47627698 |
tccatgcattgcatattccggagacatgtaaccact |
47627663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 15981925 - 15982001
Alignment:
| Q |
51 |
aggactccaaaactgtatacatcagactttatcgagaactctccatgcattgcatactccggagacatgtaaccact |
127 |
Q |
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| T |
15981925 |
aggactccaaagctgtacacatcagactttgtcgaaaaaactccttccattgcatactctggagacatgtaaccact |
15982001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 19148946 - 19149022
Alignment:
| Q |
51 |
aggactccaaaactgtatacatcagactttatcgagaactctccatgcattgcatactccggagacatgtaaccact |
127 |
Q |
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| T |
19148946 |
aggactccaaagctgtacacatcagactttgtcgaaaaaactccttccattgcatactctggagacatgtaaccact |
19149022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 36437508 - 36437581
Alignment:
| Q |
54 |
actccaaaactgtatacatcagactttatcgagaactctccatgcattgcatactccggagacatgtaaccact |
127 |
Q |
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| T |
36437508 |
actccaaagctgtatacatcagacttcaccgaaaattgtccttccatggcatactccggagacatataaccact |
36437581 |
T |
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