View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_high_45 (Length: 239)
Name: NF14728_high_45
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_high_45 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53288314 - 53288081
Alignment:
| Q |
1 |
ttgatctcactcaacctctgaactttctctatacaaattgtggattatccggtatttcgctgcctcgaccgc------------ctgctgatattaaaga |
88 |
Q |
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| T |
53288314 |
ttgatctcactcaacctctgaactttctctatacaaattgtggattatccggtatttcgctgcctcgaccgctgcctcgaccgcctgctgatattaaaga |
53288215 |
T |
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| Q |
89 |
attcaaatatgaatcgagaaagnnnnnnncaattggaacttgaatcaaaagcatttgctaaaggctacataaactttgttaagattttcagaacaaaact |
188 |
Q |
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| T |
53288214 |
attcaaatatgaatcgagaaagaaaaaaacaattggaacttgaatcaaaagcatttgctaaaggctacataaactttgttaagattttcagaacaaaact |
53288115 |
T |
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| Q |
189 |
tgccttgactacttcatcacactggtcacaaggc |
222 |
Q |
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| T |
53288114 |
tgccttgactacttcatcacactggacacaaggc |
53288081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 52805619 - 52805674
Alignment:
| Q |
125 |
aacttgaatcaaaagcatttgctaaaggctacataaactttgttaagattttcagaa |
181 |
Q |
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| T |
52805619 |
aacttgaatcaaaagcatt-gctaaaggctacatagactttgttaagatttgcagaa |
52805674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 52805569 - 52805606
Alignment:
| Q |
72 |
cctgctgatattaaagaattcaaatatgaatcgagaaa |
109 |
Q |
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| T |
52805569 |
cctgctgatattaaagatttcaaatatgcatcgagaaa |
52805606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 54142244 - 54142207
Alignment:
| Q |
72 |
cctgctgatattaaagaattcaaatatgaatcgagaaa |
109 |
Q |
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| T |
54142244 |
cctgttgatattaaagaattcaaatatgcatcgagaaa |
54142207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 11841567 - 11841732
Alignment:
| Q |
57 |
tcgctgcctcgaccgcctgctgatattaaagaattcaaatatgaatcgagaaagnnnnnnncaattggaacttgaatcaaaagcatttgctaaaggctac |
156 |
Q |
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| T |
11841567 |
tcgctgcctcgaccgcctgctgatattaaagaattcaaatatgaatcgagaaagaaaaaaacaattggaacttgaatcaaaagcatttgctaaaggctac |
11841666 |
T |
|
| Q |
157 |
ataaactttgttaagattttcagaacaaaacttgccttgactacttcatcacactggtcacaaggc |
222 |
Q |
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| T |
11841667 |
ataaactttgttaagatttacagaacaaaacttgccttgaatactacatcacactgaacacaaggc |
11841732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11841496 - 11841543
Alignment:
| Q |
1 |
ttgatctcactcaacctctgaactttctctatacaaattgtggattatc |
49 |
Q |
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|||||||||||||||| ||||||||||||||| | |||||||||||||| |
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| T |
11841496 |
ttgatctcactcaacccctgaactttctctat-ccaattgtggattatc |
11841543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 23618008 - 23618074
Alignment:
| Q |
125 |
aacttgaatcaaaagcatttgctaaaggctacataaactttgttaagattttcagaacaaaacttgcct |
193 |
Q |
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| T |
23618008 |
aacttgaatcaaaagca-ttgctaaaggcctcataaactttggtaacatttgca-aaaaaaacttgcct |
23618074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 23649350 - 23649416
Alignment:
| Q |
125 |
aacttgaatcaaaagcatttgctaaaggctacataaactttgttaagattttcagaacaaaacttgcct |
193 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||| ||| |||| || || ||||||||||| |
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| T |
23649350 |
aacttgaatcaaaagca-ttgctaaaggcctcataaactttggtaacatttgca-aaaaaaacttgcct |
23649416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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