View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14728_high_47 (Length: 238)

Name: NF14728_high_47
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14728_high_47
NF14728_high_47
[»] chr1 (14 HSPs)
chr1 (1-108)||(33048064-33048171)
chr1 (174-224)||(33047947-33047997)
chr1 (6-52)||(2222232-2222278)
chr1 (2-47)||(32201756-32201801)
chr1 (1-48)||(6180317-6180364)
chr1 (5-48)||(30288864-30288907)
chr1 (1-48)||(35512856-35512903)
chr1 (1-47)||(5875216-5875262)
chr1 (3-53)||(34802100-34802150)
chr1 (1-50)||(1366178-1366227)
chr1 (2-50)||(7519994-7520043)
chr1 (6-51)||(43671849-43671894)
chr1 (5-53)||(313884-313932)
chr1 (3-47)||(13241890-13241934)
[»] chr3 (12 HSPs)
chr3 (1-47)||(37055367-37055413)
chr3 (1-51)||(35414806-35414856)
chr3 (1-53)||(38277464-38277516)
chr3 (1-49)||(40930182-40930230)
chr3 (5-48)||(32553501-32553544)
chr3 (5-48)||(36426409-36426452)
chr3 (1-48)||(50204534-50204581)
chr3 (1-47)||(31318772-31318818)
chr3 (2-47)||(8165778-8165823)
chr3 (7-52)||(33474469-33474514)
chr3 (2-47)||(42180184-42180229)
chr3 (5-53)||(20938192-20938240)
[»] chr8 (13 HSPs)
chr8 (1-50)||(16445734-16445783)
chr8 (1-53)||(38212939-38212991)
chr8 (3-48)||(31812246-31812291)
chr8 (5-48)||(7140459-7140502)
chr8 (1-48)||(9580109-9580156)
chr8 (1-48)||(13496709-13496756)
chr8 (1-48)||(28014858-28014905)
chr8 (2-48)||(22838357-22838403)
chr8 (2-48)||(27874681-27874727)
chr8 (2-47)||(14391578-14391623)
chr8 (2-47)||(14456861-14456906)
chr8 (7-52)||(40225983-40226028)
chr8 (2-47)||(41979875-41979920)
[»] chr2 (14 HSPs)
chr2 (1-53)||(45062329-45062381)
chr2 (5-50)||(20566015-20566060)
chr2 (1-50)||(23932696-23932745)
chr2 (1-48)||(7757786-7757833)
chr2 (1-48)||(8065254-8065301)
chr2 (1-48)||(9747448-9747495)
chr2 (5-48)||(12016801-12016844)
chr2 (5-52)||(15231966-15232013)
chr2 (5-46)||(2060044-2060085)
chr2 (7-52)||(5853459-5853504)
chr2 (7-52)||(16493528-16493573)
chr2 (7-52)||(22704674-22704719)
chr2 (1-46)||(26003348-26003393)
chr2 (3-48)||(36731313-36731358)
[»] chr7 (10 HSPs)
chr7 (1-48)||(8091312-8091359)
chr7 (5-50)||(8595032-8595077)
chr7 (1-50)||(45501590-45501639)
chr7 (1-49)||(25709398-25709446)
chr7 (2-53)||(820536-820587)
chr7 (1-48)||(4969904-4969951)
chr7 (1-48)||(39757110-39757157)
chr7 (2-48)||(36032543-36032589)
chr7 (1-50)||(29398132-29398181)
chr7 (1-50)||(29692538-29692587)
[»] chr6 (7 HSPs)
chr6 (1-51)||(4371970-4372020)
chr6 (1-48)||(3261209-3261256)
chr6 (1-48)||(29863302-29863349)
chr6 (1-48)||(34692485-34692532)
chr6 (3-49)||(30591162-30591208)
chr6 (5-47)||(31069583-31069625)
chr6 (5-50)||(10887164-10887209)
[»] chr5 (4 HSPs)
chr5 (1-49)||(40980504-40980552)
chr5 (1-48)||(3398351-3398398)
chr5 (5-51)||(12641990-12642036)
chr5 (1-46)||(30893760-30893805)
[»] chr4 (16 HSPs)
chr4 (1-53)||(19450895-19450947)
chr4 (4-52)||(46803933-46803981)
chr4 (1-48)||(3085801-3085848)
chr4 (1-48)||(18882267-18882314)
chr4 (1-48)||(19468325-19468372)
chr4 (5-52)||(47326888-47326935)
chr4 (5-52)||(47341684-47341731)
chr4 (1-47)||(52391429-52391475)
chr4 (2-48)||(53376408-53376454)
chr4 (7-52)||(4779432-4779477)
chr4 (4-53)||(26471320-26471369)
chr4 (3-47)||(16667385-16667429)
chr4 (2-46)||(22130684-22130728)
chr4 (2-50)||(23545608-23545656)
chr4 (1-45)||(24684968-24685012)
chr4 (1-53)||(36971405-36971457)
[»] scaffold0155 (1 HSPs)
scaffold0155 (5-48)||(3413-3456)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-48)||(13216-13263)
[»] scaffold0128 (1 HSPs)
scaffold0128 (2-48)||(44294-44340)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-50)||(24525-24574)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-49)||(45496-45544)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 33048171 - 33048064
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcattgtaagaaccttgaacgaggtggagaccatgagattaattgaactcgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33048171 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcattgtaagaaccttgaacgaggtggagaccatgagattaattgaactcgt 33048072  T
Q  101 tattaatt 108  Q
    ||||||||    
T  33048071 tattaatt 33048064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 33047997 - 33047947
Alignment:
Q  174 gtttacataagaatattcaaatcaaaacttagttttatgaagttcatcatg 224  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  33047997 gtttaaataagaatattcaaataaaaacttagttttatgaagttcatcatg 33047947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 2222278 - 2222232
Alignment:
Q  6 ttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcat 52  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  2222278 ttaaatttcttaacatgtgtaaattttcacatgatagaaaaactcat 2222232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 32201756 - 32201801
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||||    
T  32201756 tattttaaacttcttaatatgtgcaaatttgcacataatagaaaaa 32201801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6180317 - 6180364
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  6180317 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 6180364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 30288907 - 30288864
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||    
T  30288907 tttaaacttcttaacatgtgtaaatttgcacatgatagaaaaac 30288864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35512856 - 35512903
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  35512856 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 35512903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5875262 - 5875216
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    |||||||||||||||||| ||||| |||||| ||||| |||||||||    
T  5875262 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaa 5875216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 34802100 - 34802150
Alignment:
Q  3 attttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcatt 53  Q
    |||||||||||||||| ||||| |||||| ||||| |||||||||| ||||    
T  34802100 attttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacccatt 34802150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1366178 - 1366227
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactc 50  Q
    |||||||||| ||||| | |||||||||||| ||||| ||||||||||||    
T  1366178 ctattttaaatttctttacatgtgtaaatttgcacatgatagaaaaactc 1366227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 7520043 - 7519994
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaatttt-cacatcatagaaaaactc 50  Q
    ||||||||||||||||| ||||| ||||||| ||||| ||||||||||||    
T  7520043 tattttaaacttcttaacatgtgaaaattttgcacatgatagaaaaactc 7519994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 43671849 - 43671894
Alignment:
Q  6 ttaaacttcttaatatgtgtaaattttcacatcatagaaaaactca 51  Q
    ||||||||||||| ||||||||||||| |||||| | |||||||||    
T  43671849 ttaaacttcttaacatgtgtaaatttttacatcacataaaaactca 43671894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 313884 - 313932
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcatt 53  Q
    |||||||||||||| ||||| |||||| ||||| |||||||||| ||||    
T  313884 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacccatt 313932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 13241890 - 13241934
Alignment:
Q  3 attttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    |||||||| ||||||| ||||| |||||||||||| |||||||||    
T  13241890 attttaaatttcttaacatgtgcaaattttcacatgatagaaaaa 13241934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37055413 - 37055367
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||    
T  37055413 ctattttaaacttcttaatatgtgcaaattttcacatgatagaaaaa 37055367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35414856 - 35414806
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactca 51  Q
    ||||||| |||||||||| |||||||||||| ||||| |||||||||||||    
T  35414856 ctattttgaacttcttaacatgtgtaaatttgcacatgatagaaaaactca 35414806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38277464 - 38277516
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcatt 53  Q
    |||||||||||||||||| ||||| |||||| |||||| ||||||| ||||||    
T  38277464 ctattttaaacttcttaacatgtgcaaatttacacatcgtagaaaatctcatt 38277516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40930182 - 40930230
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaact 49  Q
    |||||||||||||||||| ||||| |||||| ||||| |||||||||||    
T  40930182 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaact 40930230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 32553501 - 32553544
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||    
T  32553501 tttaaacttcttaacatgtgtaaatttacacatgatagaaaaac 32553544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 36426452 - 36426409
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||    
T  36426452 tttaaacttcttaacatgtgtaaatttacacatgatagaaaaac 36426409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 50204534 - 50204581
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  50204534 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 50204581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31318772 - 31318818
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    |||| ||||||||||||| ||||| |||||||||||| |||||||||    
T  31318772 ctatcttaaacttcttaacatgtgcaaattttcacatgatagaaaaa 31318818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 8165778 - 8165823
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    ||||||||||||||||| ||||| |||||| ||||| |||||||||    
T  8165778 tattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaa 8165823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 33474514 - 33474469
Alignment:
Q  7 taaacttcttaatatgtgtaaattttcacatcatagaaaaactcat 52  Q
    |||||||||||| ||||| |||||| ||||| ||||||||||||||    
T  33474514 taaacttcttaacatgtgcaaatttgcacatgatagaaaaactcat 33474469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 42180184 - 42180229
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    ||||||||||||||||| ||||| |||||| ||||| |||||||||    
T  42180184 tattttaaacttcttaacatgtgcaaatttacacatgatagaaaaa 42180229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 20938192 - 20938240
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcatt 53  Q
    |||||||||||||  ||||| |||||| ||||| |||||||||||||||    
T  20938192 tttaaacttcttatcatgtgcaaatttgcacatgatagaaaaactcatt 20938240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 16445783 - 16445734
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactc 50  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  16445783 ctattttaaacttcttaatatgtgcaaatttgcacataatagaaaaactc 16445734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38212991 - 38212939
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcatt 53  Q
    |||||||||||||||||| ||||| |||||| ||||| |||||||||||||||    
T  38212991 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaactcatt 38212939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 31812246 - 31812291
Alignment:
Q  3 attttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||||||| |||||| ||||| ||||||||||    
T  31812246 attttaaacttcttaatatgtgcaaatttgcacatgatagaaaaac 31812291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 7140502 - 7140459
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||||| |||||| ||||| ||||||||||    
T  7140502 tttaaacttcttaatatgtgcaaatttgcacatgatagaaaaac 7140459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9580156 - 9580109
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| |||||||||||| ||||| ||| ||||||    
T  9580156 ctattttaaacttcttaacatgtgtaaatttgcacatgataaaaaaac 9580109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13496756 - 13496709
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  13496756 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 13496709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28014905 - 28014858
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  28014905 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 28014858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 22838357 - 22838403
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    ||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  22838357 tattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 22838403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 27874727 - 27874681
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    ||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  27874727 tattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 27874681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 14391623 - 14391578
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    ||||||||||||||||| ||||| ||||||  ||||||||||||||    
T  14391623 tattttaaacttcttaacatgtgcaaatttggacatcatagaaaaa 14391578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 14456906 - 14456861
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    |||||| ||||||||| |||||| |||||| |||||||||||||||    
T  14456906 tattttcaacttcttattatgtgcaaatttgcacatcatagaaaaa 14456861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 40226028 - 40225983
Alignment:
Q  7 taaacttcttaatatgtgtaaattttcacatcatagaaaaactcat 52  Q
    |||||||||||| ||||| |||||| ||||| ||||||||||||||    
T  40226028 taaacttcttaacatgtgcaaatttgcacatgatagaaaaactcat 40225983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 41979920 - 41979875
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    ||||||||| |||||||||||||||||||| ||||  |||||||||    
T  41979920 tattttaaatttcttaatatgtgtaaatttgcacaggatagaaaaa 41979875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 45062329 - 45062381
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcatt 53  Q
    ||||||| |||||||||||||||| |||||| ||||| |||||||||||||||    
T  45062329 ctattttgaacttcttaatatgtgcaaatttgcacatgatagaaaaactcatt 45062381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 20566060 - 20566015
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaactc 50  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||    
T  20566060 tttaaacttcttaacatgtgtaaatttgcacatgatagaaaaactc 20566015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 23932696 - 23932745
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactc 50  Q
    ||||||||||||||||||||| || |||||| ||||| ||||||||||||    
T  23932696 ctattttaaacttcttaatatatgcaaatttgcacatgatagaaaaactc 23932745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7757833 - 7757786
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||| ||||||| |||||||||||| ||||| ||||||||||    
T  7757833 ctattttaaatttcttaacatgtgtaaatttgcacatgatagaaaaac 7757786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8065254 - 8065301
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  8065254 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 8065301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9747448 - 9747495
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  9747448 ctattttaaacttcttaacatgtgaaaatttgcacatgatagaaaaac 9747495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 12016801 - 12016844
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||||| |||||| ||||| ||||||||||    
T  12016801 tttaaacttcttaatatgtgcaaatttgcacatgatagaaaaac 12016844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 15231966 - 15232013
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcat 52  Q
    |||||||||||||| ||||| |||||| ||||| ||||||||||||||    
T  15231966 tttaaacttcttaacatgtgcaaatttgcacataatagaaaaactcat 15232013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 2060085 - 2060044
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaa 46  Q
    |||||| ||||||| |||||||||||| ||||||||||||||    
T  2060085 tttaaatttcttaacatgtgtaaatttgcacatcatagaaaa 2060044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 5853504 - 5853459
Alignment:
Q  7 taaacttcttaatatgtgtaaattttcacatcatagaaaaactcat 52  Q
    |||||||||||| ||||| |||||| ||||| ||||||||||||||    
T  5853504 taaacttcttaacatgtgcaaatttgcacatgatagaaaaactcat 5853459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 16493573 - 16493528
Alignment:
Q  7 taaacttcttaatatgtgtaaattttcacatcatagaaaaactcat 52  Q
    |||||||||||| ||||| |||||| ||||| ||||||||||||||    
T  16493573 taaacttcttaacatgtgcaaatttgcacatgatagaaaaactcat 16493528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 22704674 - 22704719
Alignment:
Q  7 taaacttcttaatatgtgtaaattttcacatcatagaaaaactcat 52  Q
    |||||||||||| ||||| |||||| ||||| ||||||||||||||    
T  22704674 taaacttcttaagatgtgcaaatttgcacatgatagaaaaactcat 22704719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26003393 - 26003348
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaa 46  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||    
T  26003393 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaa 26003348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 36731313 - 36731358
Alignment:
Q  3 attttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||| ||||||| |||||||||||| ||||| ||||||||||    
T  36731313 attttaaatttcttaacatgtgtaaatttacacatgatagaaaaac 36731358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8091359 - 8091312
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  8091359 ctattttaaacttcttaacatgtgtaaatttgcacatgatagaaaaac 8091312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 8595032 - 8595077
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaactc 50  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||    
T  8595032 tttaaacttcttaacatgtgtaaatttgcacatgatagaaaaactc 8595077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 45501590 - 45501639
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactc 50  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||||    
T  45501590 ctattttaaacttcttaagatgtgcaaatttgcacatgatagaaaaactc 45501639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25709446 - 25709398
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaact 49  Q
    |||||||||||||||||| ||||| |||||| ||||| |||||||||||    
T  25709446 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaact 25709398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 820587 - 820536
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcatt 53  Q
    ||||||||||||||||| ||||| |||||| ||||| |||||||||| ||||    
T  820587 tattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacccatt 820536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4969904 - 4969951
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  4969904 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 4969951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39757157 - 39757110
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  39757157 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 39757110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 36032589 - 36032543
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    ||||||||| ||||||| ||||| |||||||||||| ||||||||||    
T  36032589 tattttaaatttcttaacatgtgaaaattttcacataatagaaaaac 36032543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29398181 - 29398132
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactc 50  Q
    |||||||||||||||||| ||||| ||||||  |||| ||||||||||||    
T  29398181 ctattttaaacttcttaacatgtgcaaatttgaacatgatagaaaaactc 29398132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29692587 - 29692538
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactc 50  Q
    |||||||||||||||||| ||||  |||||| ||||| ||||||||||||    
T  29692587 ctattttaaacttcttaacatgtacaaatttgcacatgatagaaaaactc 29692538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4371970 - 4372020
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactca 51  Q
    |||||||||||||||||| |||||||||||| | ||| |||||||||||||    
T  4371970 ctattttaaacttcttaacatgtgtaaatttgcgcatgatagaaaaactca 4372020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3261209 - 3261256
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    ||||||||||||| |||| |||||||||||| ||||| ||||||||||    
T  3261209 ctattttaaactttttaacatgtgtaaatttgcacatgatagaaaaac 3261256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29863349 - 29863302
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  29863349 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 29863302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34692485 - 34692532
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  34692485 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 34692532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 30591208 - 30591162
Alignment:
Q  3 attttaaacttcttaatatgtgtaaattttcacatcatagaaaaact 49  Q
    |||| ||||||||||| |||||||||||| ||||| |||||||||||    
T  30591208 atttaaaacttcttaacatgtgtaaatttgcacatgatagaaaaact 30591162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 31069625 - 31069583
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    |||||||||||||| |||||||||||| ||||| |||||||||    
T  31069625 tttaaacttcttaacatgtgtaaatttgcacatgatagaaaaa 31069583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 10887164 - 10887209
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaactc 50  Q
    |||||||||||||| ||||| |||||| ||||| ||||||||||||    
T  10887164 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaactc 10887209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40980504 - 40980552
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaact 49  Q
    ||||||||||||| |||||||||| |||||| ||||| |||||||||||    
T  40980504 ctattttaaactttttaatatgtgcaaatttgcacatgatagaaaaact 40980552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3398351 - 3398398
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  3398351 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 3398398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 12642036 - 12641990
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaactca 51  Q
    |||||||||||||| ||||| |||||| ||||| |||||||||||||    
T  12642036 tttaaacttcttaacatgtgcaaatttgcacattatagaaaaactca 12641990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30893760 - 30893805
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaa 46  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||    
T  30893760 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaa 30893805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19450947 - 19450895
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcatt 53  Q
    |||||||||||||||||| ||||| |||||| ||||| |||||||||| ||||    
T  19450947 ctattttaaacttcttaacatgtgcaaatttgcacataatagaaaaacccatt 19450895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 46803933 - 46803981
Alignment:
Q  4 ttttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcat 52  Q
    |||||||||| |||||||||| |||||| ||||| ||||||||||||||    
T  46803933 ttttaaactttttaatatgtgcaaatttgcacatgatagaaaaactcat 46803981  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3085801 - 3085848
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  3085801 ctattttaaacttcttaaaatgtgcaaatttgcacatgatagaaaaac 3085848  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18882314 - 18882267
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  18882314 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 18882267  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19468325 - 19468372
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  19468325 ctattttaaacttcttaacatgtgcaaatttgcacataatagaaaaac 19468372  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 47326935 - 47326888
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcat 52  Q
    |||||||||||||| ||||| |||||| ||||| ||||||||||||||    
T  47326935 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaactcat 47326888  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 47341731 - 47341684
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcat 52  Q
    |||||||||||||| ||||| |||||| ||||| ||||||||||||||    
T  47341731 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaactcat 47341684  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 52391429 - 52391475
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    |||||||||||||||||| ||||| |||||| ||||| |||||||||    
T  52391429 ctattttaaacttcttaacatgtgcaaatttacacatgatagaaaaa 52391475  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 53376454 - 53376408
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    ||||||||||||||||| ||||| |||||||||||| ||| ||||||    
T  53376454 tattttaaacttcttaacatgtgcaaattttcacatgataaaaaaac 53376408  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 4779477 - 4779432
Alignment:
Q  7 taaacttcttaatatgtgtaaattttcacatcatagaaaaactcat 52  Q
    |||||||||||| ||||| |||||| ||||| ||||||||||||||    
T  4779477 taaacttcttaacatgtgcaaatttgcacatgatagaaaaactcat 4779432  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 26471320 - 26471369
Alignment:
Q  4 ttttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcatt 53  Q
    ||||||||||||||||||||||||||||  ||||  ||||||||| ||||    
T  26471320 ttttaaacttcttaatatgtgtaaatttgtacatgttagaaaaacccatt 26471369  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 16667429 - 16667385
Alignment:
Q  3 attttaaacttcttaatatgtgtaaattttcacatcatagaaaaa 47  Q
    |||||||||||||||| ||||| |||||| ||||| |||||||||    
T  16667429 attttaaacttcttaacatgtgcaaatttgcacatgatagaaaaa 16667385  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 22130684 - 22130728
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaa 46  Q
    |||||||||||| |||| |||||||||||| ||||| ||||||||    
T  22130684 tattttaaactttttaacatgtgtaaatttgcacataatagaaaa 22130728  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 23545608 - 23545656
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactc 50  Q
    |||||||||||| |||| ||||| |||||| ||||| ||||||||||||    
T  23545608 tattttaaacttattaacatgtgcaaatttgcacatgatagaaaaactc 23545656  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24684968 - 24685012
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaa 45  Q
    |||||||||||||||||| ||||| |||||| ||||| |||||||    
T  24684968 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 24685012  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36971405 - 36971457
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactcatt 53  Q
    |||||||||| ||||||| ||| |||||||| ||| | |||||||||||||||    
T  36971405 ctattttaaatttcttaacatgcgtaaatttgcacttgatagaaaaactcatt 36971457  T

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Target: scaffold0155 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 3456 - 3413
Alignment:
Q  5 tttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||||| |||||| ||||| ||||||||||    
T  3456 tttaaacttcttaatatgtgcaaatttacacatgatagaaaaac 3413  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13216 - 13263
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  13216 ctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 13263  T

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Target: scaffold0128 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 44340 - 44294
Alignment:
Q  2 tattttaaacttcttaatatgtgtaaattttcacatcatagaaaaac 48  Q
    |||||||||||| |||||||||| |||||| ||||| ||||||||||    
T  44340 tattttaaactttttaatatgtgcaaatttgcacatgatagaaaaac 44294  T

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Target: scaffold0229 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24574 - 24525
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaactc 50  Q
    |||||||||| ||||| | |||||||||||| ||||| ||||||||||||    
T  24574 ctattttaaatttctttacatgtgtaaatttgcacatgatagaaaaactc 24525  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45544 - 45496
Alignment:
Q  1 ctattttaaacttcttaatatgtgtaaattttcacatcatagaaaaact 49  Q
    |||||||||||||||| | || ||||||||| ||||| |||||||||||    
T  45544 ctattttaaacttctttacatatgtaaatttgcacatgatagaaaaact 45496  T

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