View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_high_49 (Length: 236)
Name: NF14728_high_49
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 52511764 - 52511544
Alignment:
| Q |
1 |
tatataagatactattaagaatgatcttcaaaatataagaaaatactactaattatattgaagttgactagctagtagagcaagtggataagttatcttt |
100 |
Q |
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| T |
52511764 |
tatataagatactattaagaatgatcttcaaaatataagaaaatactactaattataatgaagttgactagctagtagagcaagtggataagttatcttt |
52511665 |
T |
|
| Q |
101 |
tgatgnnnnnnngttacccttttgcaataatttgtttgttaattaacttgtggcaatgagaaacagttttctctttttgacatgatacatatatctttaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52511664 |
tgatgaaaaaaagttacccttttgcaataatttgtttgttaattaacttgtggcaatgagaaacagttttctctttttgacatgatacatatatctttaa |
52511565 |
T |
|
| Q |
201 |
tcagaattttatcgtcttttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
52511564 |
tcagaattttatcgtcttttt |
52511544 |
T |
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