View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_high_5 (Length: 516)
Name: NF14728_high_5
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Original strand, 11119139 - 11119628
Alignment:
| Q |
16 |
caagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaac |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119139 |
caagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaac |
11119238 |
T |
|
| Q |
116 |
aactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaatta |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119239 |
aactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaatta |
11119338 |
T |
|
| Q |
216 |
gaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtggcctcagaatcaatggagggggatatggttagttcaatctaaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119339 |
gaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgacctcagaatcaatggagggggatatggttagttcaatctaaat |
11119438 |
T |
|
| Q |
316 |
gaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtgccttgatgtgtatgttatg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119439 |
gaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtgccttgatgtgtatgttatg |
11119538 |
T |
|
| Q |
416 |
tgctttatgtgtgcaagataa-ccnnnnnnnnnctaagtaattttc-----attatagtatatcctctctttccgtcacaagttatgtct |
499 |
Q |
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| T |
11119539 |
tgctttatgtgtgcaagataatcttttttttttctaagtaattttcattatattatagtatatcctctctttccgtcacaagttatgtct |
11119628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 11111368 - 11111747
Alignment:
| Q |
16 |
caagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaac |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11111368 |
caagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtgcagataccattagcattgtcaac |
11111467 |
T |
|
| Q |
116 |
aactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaatta |
215 |
Q |
| |
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| ||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
11111468 |
agctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaaatgggtaatattgatgtgcttaccggaaagaaaggagaaatta |
11111567 |
T |
|
| Q |
216 |
gaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtggcct---cagaatcaatggagggggatatggttagttcaatcta |
312 |
Q |
| |
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|||| || ||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
11111568 |
gaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtggcctctgcagaatcaatggaaggggatatggttagttcaatcta |
11111667 |
T |
|
| Q |
313 |
aatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtg |
396 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |||| |||||| |||| |
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| T |
11111668 |
aatgaatgtgggttactttagatgaa----atgtggtgattggaattcactaataaagagaagtgctggctaagcacatttgtg |
11111747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 10793426 - 10793121
Alignment:
| Q |
16 |
caagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaac |
115 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| || |
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|
| T |
10793426 |
caagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacaccaaatgcagataccactagcattgttaat |
10793327 |
T |
|
| Q |
116 |
aactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaatta |
215 |
Q |
| |
|
||||||| || ||||||| || |||||| ||| ||||| || ||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |
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|
| T |
10793326 |
aactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgcttaccggaaagaaaggagaaataa |
10793227 |
T |
|
| Q |
216 |
gaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtgg---cctcagaatcaatggagggggatatggttagttcaatcta |
312 |
Q |
| |
|
| || || ||||||||||||||||| ||||||||||| || |||||||| | ||| || |||||||| | || |||||||||||||||||||| || |
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| T |
10793226 |
ggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgccgctctggtctccacagaatcatttgatggggatatggttagttcaattta |
10793127 |
T |
|
| Q |
313 |
aatgaa |
318 |
Q |
| |
|
|||||| |
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|
| T |
10793126 |
aatgaa |
10793121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 11156620 - 11156842
Alignment:
| Q |
16 |
caagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaac |
115 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||| ||||| |||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||| |
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| T |
11156620 |
caagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctcaacatccggtgcagataccattagcattgtcaac |
11156719 |
T |
|
| Q |
116 |
aactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaatta |
215 |
Q |
| |
|
|| || | | | | ||||| | |||||| ||| ||||| | |||||||||||||||| |||||||| ||||| || || | ||||||||| |||| |
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|
| T |
11156720 |
aaattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagatta |
11156819 |
T |
|
| Q |
216 |
gaaagcagtgcaattttgttaac |
238 |
Q |
| |
|
|||| || ||||| ||||||||| |
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|
| T |
11156820 |
gaaaacaatgcaactttgttaac |
11156842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 11137678 - 11137899
Alignment:
| Q |
16 |
caagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaac |
115 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||| | ||||| ||| | ||||| ||||||||||||||||||||| |
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|
| T |
11137678 |
caagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtgctgataccattagcattgtcaac |
11137777 |
T |
|
| Q |
116 |
aactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaatta |
215 |
Q |
| |
|
|| || | || |||||| |||||| | | |||| | | ||||||||||||||||||||||| ||||| || || || |||||||| |||| |
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|
| T |
11137778 |
aagttcagtgctgacaaaaatgctttctttgatagctttgaagccgccatgattaaaatgggtaatattggtgtgctgaccgggaaaaaaggagagatta |
11137877 |
T |
|
| Q |
216 |
gaaagcagtgcaattttgttaa |
237 |
Q |
| |
|
|||| || |||||||||||||| |
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|
| T |
11137878 |
gaaaacattgcaattttgttaa |
11137899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 11145999 - 11146089
Alignment:
| Q |
32 |
aatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaacaactttg |
122 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| | ||||| |||||||||||||||||||||||||||| |
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|
| T |
11145999 |
aatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaacatctggtgctgataccattagcattgtcaacaactttg |
11146089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 32 - 237
Target Start/End: Original strand, 11149968 - 11150173
Alignment:
| Q |
32 |
aatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccattagcattgtcaacaactttggaaacaacc |
131 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||| |||||||||||| | ||| ||||||||||||||||||||||||| |||| || | | | |
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|
| T |
11149968 |
aatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctcaacatctggttcagataccattagcattgtcaacaaatttgcaaccgatc |
11150067 |
T |
|
| Q |
132 |
aaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattt |
231 |
Q |
| |
|
|||| | ||| || ||| ||||| | | ||||| |||||||| |||||||| ||| | ||||| || ||||||| |||||||| || ||||| || |
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|
| T |
11150068 |
aaaaagctttttttgagagctttaaggctgctatgatcaaaatgggaaatattggtgtgttaactgggaaacaaggagagattagaaaacaatgcaactt |
11150167 |
T |
|
| Q |
232 |
tgttaa |
237 |
Q |
| |
|
|||||| |
|
|
| T |
11150168 |
tgttaa |
11150173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 11183671 - 11183613
Alignment:
| Q |
45 |
aaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccatt |
103 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||| || ||||| ||||| ||||||||| |
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|
| T |
11183671 |
aaaaggggttgtttcagagtgaccaagaattgttttccacacctggtgctgataccatt |
11183613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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