View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_11 (Length: 475)
Name: NF14728_low_11
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 30600756 - 30601196
Alignment:
| Q |
18 |
aggctaagtttgtaaaaatttatgcaattaaactgaattgaacaataaatttgagcgtaaaaaacatatttaaagttataagttataaattttaactaca |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30600756 |
aggctaagtttgtaaaaatttatgcaattaaaatgaattgaacaataaatttaaacgtaaaaaacatatttaaagttataagttataaattttgactaca |
30600855 |
T |
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| Q |
118 |
aattttatcaattcgaataaaaatcaatttaaataagaacattnnnnnnnntattaatcacttgtataccttcataatcaatttaaacttcattcaaaag |
217 |
Q |
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|||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30600856 |
aattttatcaattctaaaaaaagtcaatttaaataagaacattaaacaa--tattaatcacttgtataccttcataatcaatttaaacttcattcaaaag |
30600953 |
T |
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| Q |
218 |
tgaaaccaaatataggctacatcaacttctccctctatctatgcccatcatctaattctaagttatgactatctcacttattgttttttcttagtttctt |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30600954 |
tgaaaccaaatataggctacatcaacttctccttctatctctgcccatcatctaattctaagttatgactatctcacttattgttttttcttagtttctt |
30601053 |
T |
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| Q |
318 |
tttcggtctctcatcccaacctgattttcttgctattggaggtgcatgaacgagaggatcctggttcaaaaggaatgtgaaacttatagggcaattttca |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30601054 |
tttctgtctctcatcccaacctgattttcttgctattggaggtgcatgaacgagaggatcctggttcaaaaggaatgtgaaacttatagggcaattttca |
30601153 |
T |
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| Q |
418 |
agaataaggcctgacatcatgctgtctctgtgaatctattatt |
460 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30601154 |
agaataaggcctgacatcatgctgtatctgtgaatctattatt |
30601196 |
T |
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