View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14728_low_12 (Length: 441)

Name: NF14728_low_12
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14728_low_12
NF14728_low_12
[»] chr8 (7 HSPs)
chr8 (16-425)||(4130132-4130541)
chr8 (17-364)||(4120112-4120456)
chr8 (16-367)||(4150553-4150905)
chr8 (192-364)||(4159557-4159729)
chr8 (198-388)||(4142514-4142704)
chr8 (16-103)||(4142806-4142893)
chr8 (16-101)||(4159837-4159922)
[»] chr7 (8 HSPs)
chr7 (201-282)||(20062380-20062461)
chr7 (201-297)||(20294824-20294920)
chr7 (199-279)||(20303863-20303943)
chr7 (239-363)||(20279703-20279827)
chr7 (200-312)||(20289417-20289529)
chr7 (201-312)||(20243796-20243907)
chr7 (221-312)||(20231744-20231835)
chr7 (206-282)||(20167901-20167977)
[»] chr4 (1 HSPs)
chr4 (200-295)||(40823639-40823734)
[»] chr5 (1 HSPs)
chr5 (254-314)||(28433416-28433476)
[»] chr3 (3 HSPs)
chr3 (254-305)||(1050700-1050751)
chr3 (254-305)||(1077602-1077653)
chr3 (254-305)||(1091481-1091532)
[»] chr2 (1 HSPs)
chr2 (254-312)||(2698252-2698310)


Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 4130541 - 4130132
Alignment:
Q  16 aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130541 aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcat 4130442  T
Q  116 ttgacaatataatgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttgttataatatatatgctctaaatgtagtggttata 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4130441 ttgacaatataatgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttattataatatatatgctctaaatgtagtggttata 4130342  T
Q  216 tgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaataa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130341 tgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaataa 4130242  T
Q  316 cagcttttatcaaaatgaggattctcttagccttgttggctttgtaagtctatgtaatccatgtctctattacttaatttgacaaaaagtttagcaatac 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4130241 cagcttttatcaaaatgaggattctcttagccttgttggctttgtaagtctatgtaatccatgtctctattactttatttgacaaaaagtttagcaatac 4130142  T
Q  416 atgttcatca 425  Q
    ||||||||||    
T  4130141 atgttcatca 4130132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 4120456 - 4120112
Alignment:
Q  17 atatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcatt 116  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  4120456 atatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaatcctatctcatt 4120357  T
Q  117 tgacaatataatgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttgttataatatatatgctctaaatgtagtggttatat 216  Q
      ||| |||| ||||   || ||||||  ||||||| | |   ||| | |||||   |||   | |||||| ||||||||| |||||| |||||||||||    
T  4120356 gaacattatattgttgggattattaatgctacaaatgaattgtttaatcattactcctgt---tattataacatatatgctttaaatgcagtggttatat 4120260  T
Q  217 gccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaataac 316  Q
    |||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||      
T  4120259 gccgccagaatatgcaatggaggggcttttctctgagaaatcagatgtatatagctttggggttttattgctagagattgtcagtgggcgaagaaatacg 4120160  T
Q  317 agcttttatcaaaatgaggattctcttagccttgttggctttgtaagt 364  Q
    ||||||||||| |  |||||||| ||||||||||| ||||||||||||    
T  4120159 agcttttatcacagcgaggattcacttagccttgtaggctttgtaagt 4120112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 4150905 - 4150553
Alignment:
Q  16 aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagtattcctatatcat 115  Q
    |||||||||||| |||||||| ||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||| ||||    
T  4150905 aatatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatctcat 4150806  T
Q  116 ttgacaatataatgttaaaataattaatcttacaaattagtgagttagttattacatatgtacttg---ttataatat-atatgctctaaatgtagtggt 211  Q
    |||| | |||||||||  |||   || | |||||||| ||||  ||| || |    | | ||||||   ||||| ||  ||||| |||||||| ||||||    
T  4150805 ttgatattataatgttggaat---tagtgttacaaatgagtggtttaattttattttttttacttggggttatagtaacatatgttctaaatgcagtggt 4150709  T
Q  212 tatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaa 311  Q
    ||||||||||||||||||||||||| ||| |||||||| || ||||||||||| ||||||||||| ||| ||||||| |||||||| |||||| ||||||    
T  4150708 tatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgttagcggaagaagaa 4150609  T
Q  312 ataacagcttttatcaaaatgaggattctcttagccttgttggctttgtaagtcta 367  Q
    |||  ||||||| |||  | |||||| ||||||||||||| |||||||||||||||    
T  4150608 atagtagcttttctcatcacgaggatactcttagccttgtaggctttgtaagtcta 4150553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 192 - 364
Target Start/End: Complemental strand, 4159729 - 4159557
Alignment:
Q  192 tatgctctaaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctaga 291  Q
    ||||||||||||| |||||||||||||||||||||||||||||||  |||||||| || |||||||||||||| ||||||||||| ||||||||| ||||    
T  4159729 tatgctctaaatgcagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttggagttttattgttaga 4159630  T
Q  292 gattgtaagcggacgaagaaataacagcttttatcaaaatgaggattctcttagccttgttggctttgtaagt 364  Q
    |||||| ||||| |||||||| |  |||||||| || || || ||||||||||||||||||||||||||||||    
T  4159629 gattgttagcggccgaagaaacagtagcttttaccacaacgaagattctcttagccttgttggctttgtaagt 4159557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 198 - 388
Target Start/End: Complemental strand, 4142704 - 4142514
Alignment:
Q  198 ctaaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgt 297  Q
    ||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||| || || ||||||||||||||| ||||    
T  4142704 ctaaatgcagtggttatatgccacctgaatatgcaatggaggggcttttctcagagaaatcagatgtctatagtttcggagttttattgctagagcttgt 4142605  T
Q  298 aagcggacgaagaaataacagcttttatcaaaatgaggattctcttagccttgttggctttgtaagtctatgtaatccatgtctctattac 388  Q
     || |||||||||||||  ||||||||||| |  |||||||||||||||||||| |||||||||||| ||| || || |||||| ||||||    
T  4142604 tagtggacgaagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatagtcgatgtctttattac 4142514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 4142893 - 4142806
Alignment:
Q  16 aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagta 103  Q
    ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4142893 aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagta 4142806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 4159922 - 4159837
Alignment:
Q  16 aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaag 101  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||| ||||||||||||||||||||||    
T  4159922 aatatcagactttggtttagctagaattgttaaaggaggagaagatgatgaaacaaacacaaatagggttgttggaacttagtaag 4159837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 20062461 - 20062380
Alignment:
Q  201 aatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgtttt 282  Q
    |||| |||||||||||| | |||||||| ||||||   |||||||| ||||||||||||||||| | |||||||||||||||    
T  20062461 aatgcagtggttatatgtctcctgaatacgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgtttt 20062380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 20294824 - 20294920
Alignment:
Q  201 aatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgt 297  Q
    |||| ||||| |||||| | |||||||||||||||   ||| | || ||||||||||||||||| | |||||||||||||||  |||||||||||||    
T  20294824 aatgcagtggctatatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttgatgctagagattgt 20294920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 20303863 - 20303943
Alignment:
Q  199 taaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgt 279  Q
    |||||| ||||| |||||| | |||||||| |||||| | |||||||| ||||||||||||||||| | ||||||||||||    
T  20303863 taaatgcagtggctatatgtctcctgaatacgcaatgcgaggacttttttcagagaaatcagatgtttttagctttggtgt 20303943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 363
Target Start/End: Original strand, 20279703 - 20279827
Alignment:
Q  239 ggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaataacagcttttatcaaaatgaggatt 338  Q
    |||||||| ||||||||||||||||| | |||||||||||||||  | |||||||| || |||||  |||||||    ||||||||| | |||||| ||     
T  20279703 ggacttttttcagagaaatcagatgtttttagctttggtgttttggtactagagatcgttagcgggagaagaaactcaagcttttatgacaatgagcatg 20279802  T
Q  339 ctcttagccttgttggctttgtaag 363  Q
    |||| || ||||| || ||||||||    
T  20279803 ctctgagtcttgtaggatttgtaag 20279827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 312
Target Start/End: Original strand, 20289417 - 20289529
Alignment:
Q  200 aaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaa 299  Q
    ||||| |||||||||||  | || ||||| ||||||   ||||| || ||||||||||||||||| | ||||||||||||||| || ||||||||| | |    
T  20289417 aaatgcagtggttatatatctcccgaatacgcaatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttgttactagagattatta 20289516  T
Q  300 gcggacgaagaaa 312  Q
    ||||  |||||||    
T  20289517 gcgggagaagaaa 20289529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 20243796 - 20243907
Alignment:
Q  201 aatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaag 300  Q
    |||||||||| || ||| | |||||||||||||||   ||| | || ||||||||||||||||| | |||||||||||| ||  | ||||||||||| |     
T  20243796 aatgtagtggctacatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgctactagagattgttat 20243895  T
Q  301 cggacgaagaaa 312  Q
    |||| |||||||    
T  20243896 cggaagaagaaa 20243907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 20231744 - 20231835
Alignment:
Q  221 cctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaa 312  Q
    |||||||||||||||   ||| | || ||||||||||||||||| | |||||||||||| ||  | ||||||||||| | |||| |||||||    
T  20231744 cctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgctactagagattgttatcggaagaagaaa 20231835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 20167977 - 20167901
Alignment:
Q  206 agtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgtttt 282  Q
    ||||| |||||| | || || |||||||||   ||||| || ||||||||||||||||| | |||||||||||||||    
T  20167977 agtggctatatgtctcccgagtatgcaatgcaaggactattttcagagaaatcagatgtgtttagctttggtgtttt 20167901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 40823734 - 40823639
Alignment:
Q  200 aaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagatt 295  Q
    ||||| || ||||||||| | ||||||||||| |||   ||||| || ||||||||||||||||| | |||||||||||||||  | |||||||||    
T  40823734 aaatgcagcggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttgatactagagatt 40823639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 28433416 - 28433476
Alignment:
Q  254 aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaata 314  Q
    ||||||||||||| |||||||||||| ||||||||||| ||  ||||||||  ||||||||    
T  28433416 aaatcagatgtatttagctttggtgtattattgctagaaataataagcggaaaaagaaata 28433476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 1050700 - 1050751
Alignment:
Q  254 aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggac 305  Q
    ||||| ||||||| ||||||||| || |||||||||||||||||||| ||||    
T  1050700 aaatctgatgtatttagctttggcgtattattgctagagattgtaagtggac 1050751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 1077602 - 1077653
Alignment:
Q  254 aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggac 305  Q
    ||||| ||||||| ||||||||| || |||||||||||||||||||| ||||    
T  1077602 aaatctgatgtatttagctttggcgtattattgctagagattgtaagtggac 1077653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 1091481 - 1091532
Alignment:
Q  254 aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggac 305  Q
    ||||| ||||||| |||||||||||| ||||| |||||||||||||| ||||    
T  1091481 aaatctgatgtatttagctttggtgtattattactagagattgtaagtggac 1091532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 2698310 - 2698252
Alignment:
Q  254 aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaa 312  Q
    ||||||||||||||||| |||||||| ||| | ||||||||||| ||||| || |||||    
T  2698310 aaatcagatgtatatagttttggtgtattactactagagattgtgagcggccgcagaaa 2698252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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