View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14728_low_13 (Length: 439)
Name: NF14728_low_13
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_13 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 42265887 - 42266305
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42265887 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtt |
42265986 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42265987 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
42266086 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266087 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
42266186 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266187 |
gcgtgataatattttgttactctggtatctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaa |
42266286 |
T |
|
| Q |
416 |
aatcttagtatgctctgtg |
434 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42266287 |
aatcttagtatgctctgtg |
42266305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 48702154 - 48701736
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702154 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
48702055 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702054 |
tgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
48701955 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701954 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
48701855 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701854 |
gcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaa |
48701755 |
T |
|
| Q |
416 |
aatcttagtatgctctgtg |
434 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48701754 |
aatcttagtatgctctgtg |
48701736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 42270606 - 42270941
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42270606 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtt |
42270705 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270706 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
42270805 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270806 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
42270905 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaacagt |
351 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42270906 |
gcgtgataatattttgttactctggtatctaacagt |
42270941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 66 - 434
Target Start/End: Complemental strand, 30950467 - 30950098
Alignment:
| Q |
66 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtac |
163 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950467 |
gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtac |
30950368 |
T |
|
| Q |
164 |
tctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttc |
263 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30950367 |
tttccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccc-ttatttgttgaggggtttc |
30950269 |
T |
|
| Q |
264 |
cacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950268 |
cacgtaaaatattgtgtgttcagttcctcttttctcttatcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagct |
30950169 |
T |
|
| Q |
364 |
cttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
434 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950168 |
cctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
30950098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 24520358 - 24520031
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520358 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
24520259 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520258 |
tgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
24520159 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24520158 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagtt |
24520059 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtac |
343 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
24520058 |
gcgtgataatattttgttactctggtac |
24520031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 48697465 - 48697131
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697465 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
48697366 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697365 |
tgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
48697266 |
T |
|
| Q |
216 |
ctctactcttgccccgtggtt-ttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
314 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48697265 |
ctctactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagc |
48697166 |
T |
|
| Q |
315 |
tgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697165 |
tgcgtgataatattttgttactctggtacctaaca |
48697131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 66 - 350
Target Start/End: Complemental strand, 30945761 - 30945476
Alignment:
| Q |
66 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtac |
163 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945761 |
gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtac |
30945662 |
T |
|
| Q |
164 |
tctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttc |
263 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
30945661 |
tctccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtgatttttt-cccttatttgttgaggggtttc |
30945563 |
T |
|
| Q |
264 |
cacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30945562 |
cacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctgatacctaacag |
30945476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 66 - 349
Target Start/End: Original strand, 10427323 - 10427597
Alignment:
| Q |
66 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
165 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
10427323 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaatttgtctc |
10427412 |
T |
|
| Q |
166 |
tccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
264 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10427413 |
tccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttatctactttttccccgtagttttttccccttatttgttgaggggtttcc |
10427512 |
T |
|
| Q |
265 |
acgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
10427513 |
gcgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattctgttactctggtacctaaca |
10427597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 141 - 336
Target Start/End: Original strand, 48782850 - 48783031
Alignment:
| Q |
141 |
ataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt |
240 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
48782850 |
ataagagagagtggtaattgtactc--catgtatttagagagaggtcatctaatttcttccacttagtgaaagttct---------ccccatg--ttttt |
48782936 |
T |
|
| Q |
241 |
ccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttact |
336 |
Q |
| |
|
||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
48782937 |
ccctttatttgttgagaaatttccacgt-aaatattgtgtgttcagttcctgttttctcgtttcttattttaatcgcgtgataatattttgatact |
48783031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 1979240 - 1979375
Alignment:
| Q |
84 |
aaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagaga |
183 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| ||| |||| |||||||| |||||||||||||||||||| | ||| ||||||| |||| ||||| |
|
|
| T |
1979240 |
aaatagtttcaaatgtgaggtttctcctggttagtgctagt----attctcctgtttataagagagagtggtaaatataccctccttgcattt--agaga |
1979333 |
T |
|
| Q |
184 |
ggtcctgtaatttcttccacttagtgaaagttctctactctt |
225 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||| ||||||||| |
|
|
| T |
1979334 |
ggtcgtgtaatttcttcctcttactgaaagttatctactctt |
1979375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 17248015 - 17248112
Alignment:
| Q |
198 |
ttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttt |
296 |
Q |
| |
|
||||||||| |||||||||| ||||||| || |||||||||||||||||||| || |||| |||||| || ||||||||||| || |||| ||||||| |
|
|
| T |
17248015 |
ttccacttaatgaaagttctatactcttatccggtggttttttccccttatttattaagggatttccatgt-aaatattgtgtatttagtttctctttt |
17248112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 36615438 - 36615361
Alignment:
| Q |
270 |
aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaa |
347 |
Q |
| |
|
||||| ||| ||||| ||| |||||||||| | |||||||||| ||| | ||||||||||| ||||||| |||||||| |
|
|
| T |
36615438 |
aaataatgtatgttcggtttctcttttctcatatcttattttaactgtgcgataatattttattactctagtacctaa |
36615361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 30165900 - 30165968
Alignment:
| Q |
270 |
aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct |
338 |
Q |
| |
|
||||||| |||||||| ||| | ||||||| | ||||||||||| || |||||| |||||||||||||| |
|
|
| T |
30165900 |
aaatattatgtgttcaattcattttttctcatatcttattttagttgtgtgatattattttgttactct |
30165968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 1979567 - 1979604
Alignment:
| Q |
245 |
ttatttgttgaggggtttccacgtaaaatattgtgtgtt |
283 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1979567 |
ttatttgttgaggggtttccacgt-aaatattgtgtgtt |
1979604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 1999189 - 1999230
Alignment:
| Q |
329 |
ttgttactctggtacctaacagtggtatcagagcccttggtt |
370 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
1999189 |
ttgttattctgatacctaacagtggtatcagagcacttggtt |
1999230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 5823608 - 5823190
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823608 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
5823509 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823508 |
tgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
5823409 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823408 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
5823309 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823308 |
gcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaa |
5823209 |
T |
|
| Q |
416 |
aatcttagtatgctctgtg |
434 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5823208 |
aatcttagtatgctctgtg |
5823190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 5818846 - 5818513
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818846 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
5818747 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818746 |
tgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
5818647 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5818646 |
ctctactcttgccccgtggttttttccccttattagttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagtt |
5818547 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5818546 |
gcgtgataatattttgttactctggtacctaaca |
5818513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 2817584 - 2817178
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcctagt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
2817584 |
caaatcagtaacaacacaagaacaagtaaaacttgtttagggtaatgagagaaaaaatatagagaggaaaaatagtttctcct--------------agt |
2817499 |
T |
|
| Q |
115 |
ttgtgttagtttgtattctcctatttataagagagag--tggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaa |
212 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| | |
|
|
| T |
2817498 |
ttgtattagttagtattctcctatttataagagagagagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttccacttagtgaga |
2817399 |
T |
|
| Q |
213 |
gttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttta |
312 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2817398 |
gttctttactcttgccctgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttatttta |
2817300 |
T |
|
| Q |
313 |
gctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaag |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| || |||||||||||| |||||||| |
|
|
| T |
2817299 |
gctgcgtgataatattttgttactctggtacctaacagtggtatcaaagccgctggttcgtagttgttattccgcagtaataaactagtggtgtggtaag |
2817200 |
T |
|
| Q |
413 |
aaaaatcttagtatgctctgtg |
434 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
2817199 |
aaaaatcttagtatgctatgtg |
2817178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 57 - 349
Target Start/End: Original strand, 54545906 - 54546200
Alignment:
| Q |
57 |
atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtg |
153 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54545906 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
54546005 |
T |
|
| Q |
154 |
gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
253 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54546006 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcatccacttagtgaaagttctctactctagccccgtggttttttccccttatttgtt |
54546105 |
T |
|
| Q |
254 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54546106 |
gaggggtttccacgt-aaatattgtatgttcagttcctcttttctcatctcttattttagctgcgtgataatattttgttactctggtacctaaca |
54546200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 196 - 349
Target Start/End: Complemental strand, 24659287 - 24659136
Alignment:
| Q |
196 |
tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttt |
295 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24659287 |
tcttccacttagtgaaagttct--actcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctcttt |
24659190 |
T |
|
| Q |
296 |
tctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
24659189 |
tctcatctcttattttagctgtgtgataatattttattactctggtacctaaca |
24659136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 235 - 341
Target Start/End: Original strand, 4579254 - 4579360
Alignment:
| Q |
235 |
ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4579254 |
ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgtta |
4579353 |
T |
|
| Q |
335 |
ctctggt |
341 |
Q |
| |
|
||||||| |
|
|
| T |
4579354 |
ctctggt |
4579360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 163 - 335
Target Start/End: Complemental strand, 31204950 - 31204781
Alignment:
| Q |
163 |
ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc-ccgtggttttttccccttatttgttgaggggtt |
261 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| | ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
31204950 |
ctctccttatatttagagag--gttttgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctcttatttgttgaggggtt |
31204853 |
T |
|
| Q |
262 |
tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac |
335 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| || |||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
31204852 |
tccacgt-aaatattgtgagttcagttcctctttt-tcatctcttcttttaactgcgtgctaatattttgttac |
31204781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 24671293 - 24671173
Alignment:
| Q |
66 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
165 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
24671293 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctattt-caagagagag-ggtaatttgtctc |
24671204 |
T |
|
| Q |
166 |
tccttgtatttagagagaggtcctgtaattt |
196 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |
|
|
| T |
24671203 |
tccttgtatttagagagaagtcttgtaattt |
24671173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 311
Target Start/End: Original strand, 35977103 - 35977258
Alignment:
| Q |
154 |
gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttc-tctactcttgccccgtggttttttccccttatttgt |
252 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||| || | |||||||||| ||| |||||||| ||| ||| |
|
|
| T |
35977103 |
gtaattgttctctccttgtatttagagagaagtcttgtaattttttccacttagtgaaaactcttttactcttgccaagtgagtttttccc--tatatgt |
35977200 |
T |
|
| Q |
253 |
tgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttt |
311 |
Q |
| |
|
||| || ||| |||| ||||||||| |||||| || |||||||||| |||||||||| |
|
|
| T |
35977201 |
tgatggttttttacgt-aaatattgtttgttcaatttctcttttctcacctcttatttt |
35977258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 4579134 - 4579241
Alignment:
| Q |
66 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
165 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||| | ||||||| ||||||| ||| |
|
|
| T |
4579134 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcatag--------agttagtattctcctattt-cacgagagag-ggtaatttgtctc |
4579223 |
T |
|
| Q |
166 |
tccttgtatttagagaga |
183 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4579224 |
tccttgtatttagagaga |
4579241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 25877086 - 25877142
Alignment:
| Q |
305 |
ttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagag |
361 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
25877086 |
ttattttagttgcgtaataatattatgttattctggtacctaacagtggtatcagag |
25877142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 9444425 - 9444007
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444425 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
9444326 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444325 |
tgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
9444226 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444225 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
9444126 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444125 |
gcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaa |
9444026 |
T |
|
| Q |
416 |
aatcttagtatgctctgtg |
434 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9444025 |
aatcttagtatgctctgtg |
9444007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 9439705 - 9439372
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439705 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
9439606 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439605 |
tgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
9439506 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439505 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
9439406 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9439405 |
gcgtgataatattttgttactctggtacctaaca |
9439372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 4799315 - 4799371
Alignment:
| Q |
276 |
tgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgt |
332 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
4799315 |
tgtgtgttcaatttctcttttctcatctcttattttagcagtgtgataatattttgt |
4799371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 4844870 - 4844943
Alignment:
| Q |
277 |
gtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
350 |
Q |
| |
|
||||||||| ||| |||| |||| |||||||||| | |||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
4844870 |
gtgtgttcaattcttcttatctcaactcttatttttacagcgtgataatgttttgtttctcttgtacctaacag |
4844943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 41718394 - 41718812
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718394 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
41718493 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718494 |
tgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
41718593 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718594 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
41718693 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718694 |
gcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaa |
41718793 |
T |
|
| Q |
416 |
aatcttagtatgctctgtg |
434 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41718794 |
aatcttagtatgctctgtg |
41718812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 41723120 - 41723453
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723120 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
41723219 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723220 |
tgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
41723319 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723320 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
41723419 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41723420 |
gcgtgataatattttgttactctggtacctaaca |
41723453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 34359940 - 34360273
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
34359940 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctcctagtt |
34360039 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360040 |
tgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
34360139 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360140 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttctacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
34360239 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34360240 |
gcgtgataatattttgttactctggtacctaaca |
34360273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 34352232 - 34352546
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
34352232 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctcctagtt |
34352331 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352332 |
tgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
34352431 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352432 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
34352531 |
T |
|
| Q |
316 |
gcgtgataatatttt |
330 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34352532 |
gcgtgataatatttt |
34352546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 29585634 - 29585300
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttaga-tagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagt |
114 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
29585634 |
caaatcagtaacaacacaacaacaagtaaagcttgtctagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagt |
29585535 |
T |
|
| Q |
115 |
ttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagt |
214 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585534 |
ttgtattagttagtattctcctatttataagagagagtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccacttagtgaaagt |
29585435 |
T |
|
| Q |
215 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585434 |
tctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagc |
29585335 |
T |
|
| Q |
315 |
tgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
29585334 |
tgcatgataatattttgttactctgatacctaaca |
29585300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 66 - 434
Target Start/End: Complemental strand, 27878994 - 27878624
Alignment:
| Q |
66 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtac |
163 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878994 |
gaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtac |
27878895 |
T |
|
| Q |
164 |
tctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttc |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878894 |
tctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttc |
27878795 |
T |
|
| Q |
264 |
cacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878794 |
cacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcc |
27878695 |
T |
|
| Q |
364 |
cttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
434 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878694 |
cctggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
27878624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 1234685 - 1235018
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaa-atatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234685 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
1234784 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234785 |
tgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
1234884 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234885 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
1234984 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1234985 |
gcgtgataatattttgttactctggtacctaaca |
1235018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 26976464 - 26976131
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976464 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
26976365 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976364 |
tgtgttagttagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
26976265 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976264 |
ctctactcttgccccttggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
26976165 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26976164 |
gcgtgataatattttgttactctggtacctaaca |
26976131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 27874323 - 27873990
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27874323 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtt |
27874224 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874223 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
27874124 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
27874123 |
ctctactcttgccccgtggttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagat |
27874024 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27874023 |
gcgtgataatattttgttactctggtacctaaca |
27873990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 66 - 349
Target Start/End: Original strand, 18967920 - 18968194
Alignment:
| Q |
66 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
165 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||| | ||||||| | ||||| ||| |
|
|
| T |
18967920 |
gaaaaatataaagaggaaatatagtttctcttgtgaggtttctcctagt--------gttagtattctcctatttc-atgagagag-gctaatttgtctc |
18968009 |
T |
|
| Q |
166 |
tccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
264 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18968010 |
tccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
18968109 |
T |
|
| Q |
265 |
acgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18968110 |
acgtaaaatattatgtattcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
18968194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 84 - 350
Target Start/End: Original strand, 30986563 - 30986830
Alignment:
| Q |
84 |
aaatagtttctcctg-tgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagag |
182 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||| ||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30986563 |
aaatagtttctcctcatgaggtttctcctaggtagtgtcagt----attcttctatttacaagagagagtggtaattgtactctccttgcatttagagag |
30986658 |
T |
|
| Q |
183 |
aggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtgg--ttttttccccttatttgttgagggg---tttccacgtaaaatattg |
277 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
30986659 |
aggtcctgcaatttcttccacttagtgaaagttctctactcttgccccgtggttttttttttccttatttgttgaggggtactttccacgt-aaatattg |
30986757 |
T |
|
| Q |
278 |
tgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacag |
350 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
30986758 |
tgcgttcagttcctcttttctcgtctcttattttagctacgtgataatattttgttactctgatacctaacag |
30986830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 67 - 303
Target Start/End: Original strand, 30966689 - 30966923
Alignment:
| Q |
67 |
aaaaatatagagaggaa-aaatagtttctcct-gtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtact |
164 |
Q |
| |
|
|||||||||||||| || ||||||||||| || |||||||||||||||| | | | ||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
30966689 |
aaaaatatagagagaaagaaatagtttctacttgtgaggtttctcctaggtagcctcagt----attcttctatttacaagagagagtggtaattgtact |
30966784 |
T |
|
| Q |
165 |
ctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttc |
263 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| ||||||| |
|
|
| T |
30966785 |
ctccttgcatttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttgccccgtgattttatttcccttatttgttgatgggtttc |
30966884 |
T |
|
| Q |
264 |
cacgtaaaatattgtgtgttcagttcctcttttctcgtct |
303 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30966885 |
cacgt-aaatattgtgtgttcagttcctcttttctcgtct |
30966923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 298 - 434
Target Start/End: Original strand, 30967674 - 30967810
Alignment:
| Q |
298 |
tcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaac |
397 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
30967674 |
tcgtctcttattttagctgcttgataatattttgttactctggtacctaacagtggtatcagagcctttagttcgtagctgttattccgctgcgataaac |
30967773 |
T |
|
| Q |
398 |
tagtggagtggtaagaaaaatcttagtatgctctgtg |
434 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30967774 |
tagtggtgtggtaagaaaaatcttagtatgctctgtg |
30967810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 158 - 344
Target Start/End: Original strand, 21966677 - 21966860
Alignment:
| Q |
158 |
ttgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgagg |
257 |
Q |
| |
|
|||||||||| ||| | ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | | |||||||| |||||| |||||| |
|
|
| T |
21966677 |
ttgtactctctttgaaattagagagaggtcttataatttcttccatttagtgaaagttctctactcttgccccat-gatttttccctttatttattgagg |
21966775 |
T |
|
| Q |
258 |
ggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
344 |
Q |
| |
|
||||||||| | ||||||| | |||| ||||||||||||||| | | ||| ||||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
21966776 |
ggtttccacat-aaatattttatgtttagttcctcttttctcatatgtta-tttagctgcgtgataatgtttcgttactttggtacc |
21966860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 181 - 434
Target Start/End: Complemental strand, 23012667 - 23012415
Alignment:
| Q |
181 |
agaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgt |
280 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||| ||| | |||||| || | ||||||||||||| || ||||| |
|
|
| T |
23012667 |
agaggtcttgaaatttctctcacttagtgaaagttctctactcttgccca-tggtttttccccttaatttgt-gacgagtttccacgtaaa-taatgtgt |
23012571 |
T |
|
| Q |
281 |
gttcagttcctctttt-ctcgtctcttattttagctgcgtgataata-ttttgttactctggtacctaacagtggtatcagagcccttggttcgtagctg |
378 |
Q |
| |
|
||||| ||| |||||| ||||||||||||||||| |||||||||||| |||| ||||| || |||| |||| || || ||||| |||| |||||| || |
|
|
| T |
23012570 |
gttcaattcttctttttctcgtctcttattttagttgcgtgataatattttttttactttgttacccaacaatgtcatttgagccattggctcgtagttg |
23012471 |
T |
|
| Q |
379 |
ttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
434 |
Q |
| |
|
|| |||| | | |||| |||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
23012470 |
ttgttccacatcaacaaacaagtgcagtggtaagaaaaaacttagtatgctttgtg |
23012415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 6174333 - 6174273
Alignment:
| Q |
56 |
gatagtgagagaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagttt |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||| | ||| |||| ||||||| |
|
|
| T |
6174333 |
gatagtgagagaaaaatatagaaaggaaatatagtttctcctataaggattcttctagttt |
6174273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 5198988 - 5198664
Alignment:
| Q |
17 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaa-tatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198988 |
caaatcagtaacaacacaagaacaagtaaagcttgtttagatagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtt |
5198889 |
T |
|
| Q |
116 |
tgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagtt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198888 |
tgtgttagttagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagtt |
5198789 |
T |
|
| Q |
216 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198788 |
ctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagct |
5198689 |
T |
|
| Q |
316 |
gcgtgataatattttgttactctgg |
340 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5198688 |
gcgtgataatattttgttactctgg |
5198664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 186 - 434
Target Start/End: Original strand, 825632 - 825881
Alignment:
| Q |
186 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
825632 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc |
825731 |
T |
|
| Q |
285 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattc |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
825732 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattc |
825831 |
T |
|
| Q |
385 |
cgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
434 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
825832 |
cgctgtgataaactagtgaagtggtaagaaaaatcttagtatgctctgtg |
825881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 66 - 427
Target Start/End: Original strand, 15602911 - 15603272
Alignment:
| Q |
66 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
165 |
Q |
| |
|
|||||||||||| || |||| ||| || | || ||||||||||| |||| ||||||||| ||||||||||||||| |||| ||| |||||||||||| | |
|
|
| T |
15602911 |
gaaaaatatagaaagaaaaattagatttttctatgaggtttctcttagtaagtgttagttagtattctcctatttacaagatagaatggtaattgtacac |
15603010 |
T |
|
| Q |
166 |
tccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcca |
265 |
Q |
| |
|
||| || ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15603011 |
tccatgcatttagagagaggtcttgtaatttcttctacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcca |
15603110 |
T |
|
| Q |
266 |
cgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccct |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| ||| ||||||| |||||||| | | |
|
|
| T |
15603111 |
cgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttcaattgcgtgataatattttcttactctcacacccaacagtgctatcagagtcat |
15603210 |
T |
|
| Q |
366 |
tggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg |
427 |
Q |
| |
|
||||||||| |||||||||| || | ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
15603211 |
tggttcgtaattgttattccgatgcaaaaaactggtggagtggtaagaaatatcttagtatg |
15603272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 186 - 349
Target Start/End: Original strand, 830288 - 830452
Alignment:
| Q |
186 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttt-ttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830288 |
tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
830387 |
T |
|
| Q |
285 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
830388 |
agttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtacctaaca |
830452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 81 - 342
Target Start/End: Original strand, 28715815 - 28716070
Alignment:
| Q |
81 |
gaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagag |
180 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| | |||||||| ||||||||||||||| || | ||||||||||||||||||||| |||||||| |
|
|
| T |
28715815 |
gaaaaatagtttctcttgtaaggtttctcctaggtagtgttagt----attctcctatttataggaaacggtggtaattgtactctccttgcatttagag |
28715910 |
T |
|
| Q |
181 |
agaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgt |
280 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||| |||| | |||| ||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
28715911 |
agatgtcctgtaatttcttccactttgtgaaagttctctattcttctcttgtgg-tttttccccttatttaatgaggggtttccacgt-aaatattgtgt |
28716008 |
T |
|
| Q |
281 |
gttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggta |
342 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
28716009 |
gttcaattcctcttttgtcgtctcttattttaaatgtgtgataatattttgttactctggta |
28716070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 70 - 340
Target Start/End: Complemental strand, 30397179 - 30396920
Alignment:
| Q |
70 |
aatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactctcct |
169 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||| || | |||| ||||||| ||||||| |
|
|
| T |
30397179 |
aatatagagaggaaatatagtttctcctgtgagatttctcctagt--------gttaatattctcctatttc-aacatagag-ggtaatttgtctctcct |
30397090 |
T |
|
| Q |
170 |
tgtatttagagagaggtcctgtaatttcttccacttagtgaaa-gttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgt |
268 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||||||||||||||||||||| ||| |
|
|
| T |
30397089 |
tgtatatagaaagaggtcttgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttcccttatttgttgaggggtttcaacg- |
30396991 |
T |
|
| Q |
269 |
aaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgg |
340 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30396990 |
aaaatat-gtgtgttcagttcgtcttttctcgtctcttattttagctgcgtgataatattttgctactctgg |
30396920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 427
Target Start/End: Complemental strand, 13844014 - 13843719
Alignment:
| Q |
129 |
attctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc |
228 |
Q |
| |
|
|||||||||||| ||| | |||||||||||| || ||| |||||||||| | || ||||||||||||||||||||||| ||||| |||| |||| || | |
|
|
| T |
13844014 |
attctcctatttttaaaatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccacttaatgaaaattctatacttttaac |
13843915 |
T |
|
| Q |
229 |
ccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttca-gttcctcttttctcgtctcttattttagctgcgtgataatat |
327 |
Q |
| |
|
| | |||||| |||||||||||||||||||||||||| |||||| |||||||| || || ||||||| |||| |||| | ||||||||||| |
|
|
| T |
13843914 |
ctat-aatttttctccttatttgttgaggggtttccacgt-aaatat--tgtgttcatttttcttttttctcaaaacttactttacttacgtgataatat |
13843819 |
T |
|
| Q |
328 |
tttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatg |
427 |
Q |
| |
|
||| |||||||| || | | |||||||| |||||| |||| |||| ||| ||||||||| ||||| ||||||||||||||||||| |||||||| |
|
|
| T |
13843818 |
tttattactctgatagccacaagtggtattagagccattggctcgtgatagttgttccgctgtagcaaactggtggagtggtaagaaaaatattagtatg |
13843719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 349
Target Start/End: Complemental strand, 31593068 - 31592910
Alignment:
| Q |
189 |
tgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt |
288 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| | |||||||||| | |||||| ||||| | |||||||||||| |||||| |||| ||| |
|
|
| T |
31593068 |
tgtaatttctttcggttagtgaaagttctctactcttatct-gtggttttttttc-ttatttattgagagatttccacgtaaattattgtatgttatgtt |
31592971 |
T |
|
| Q |
289 |
cctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||| ||||||| || |||| |||| |
|
|
| T |
31592970 |
cctcttttctcgtctcttattctatctgtgtgataatattatgttactttgatacccaaca |
31592910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 349
Target Start/End: Complemental strand, 13840456 - 13840240
Alignment:
| Q |
127 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
226 |
Q |
| |
|
||||||| ||||| ||||||||| | ||||||||||||||||| ||||||||||||||| |||||||| || |||| || ||| || |||||||||| |
|
|
| T |
13840456 |
gtattcttttatttttaagagagaattgtaattgtactctccttatatttagagagaggttttgtaattt-ttttacttggtaaaaattttctactcttg |
13840358 |
T |
|
| Q |
227 |
ccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata |
326 |
Q |
| |
|
| || || |||| |||||| |||||||||| || || || |||||| ||||||| ||||||| |||||| ||| ||||| || | |||||||||| |
|
|
| T |
13840357 |
ctccatg--ttttcccccttgtttgttgaggaattctcatgt-aaatat--tgtgttcggttcctcctttctcatcttttattataattacgtgataata |
13840263 |
T |
|
| Q |
327 |
ttttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||| ||||||||| |||| |
|
|
| T |
13840262 |
ttttgttattctggtacccaaca |
13840240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 8004167 - 8004292
Alignment:
| Q |
127 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
226 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||| ||||| |||||||| | |||||||||||| | |||||||||| |||| || | |
|
|
| T |
8004167 |
gtattctcctatttataagagagagtg-taattgtactcttcttacatttaaagagaggttttataatttcttccattcagtgaaagttttctagtcata |
8004265 |
T |
|
| Q |
227 |
ccccgtggttttttccccttatttgttg |
254 |
Q |
| |
|
|||||| | ||||||| ||||||||||| |
|
|
| T |
8004266 |
ccccgttg-tttttcctcttatttgttg |
8004292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 830209 - 830291
Alignment:
| Q |
57 |
atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgtta--gtttgtattctcct |
136 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
830209 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcct |
830291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 825553 - 825635
Alignment:
| Q |
57 |
atagtgagag-aaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgtta--gtttgtattctcct |
136 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||||||||| |||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
825553 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgcgaggtttctcctaggtagtgttagtgtttgtattctcct |
825635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 329
Target Start/End: Complemental strand, 12175881 - 12175768
Alignment:
| Q |
214 |
ttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttag |
313 |
Q |
| |
|
||||||||||||| || | ||||||||| |||||| ||||| |||||||| ||||||||||||||||| || || |||| || ||| ||||||||| |
|
|
| T |
12175881 |
ttctctactcttgtccaattgttttttcca-ttatttattgagatgtttccaca-aaaatattgtgtgttcaatttcttttttatcatcttttattttag |
12175784 |
T |
|
| Q |
314 |
ctgcgtgataatattt |
329 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12175783 |
ttgcgtgataatattt |
12175768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 9358207 - 9358158
Alignment:
| Q |
285 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
334 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||| ||||||||| |||| |
|
|
| T |
9358207 |
agttcttcttttctcgtctgttgttttagctgcgtaataatatttggtta |
9358158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 42117769 - 42117876
Alignment:
| Q |
179 |
agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt |
278 |
Q |
| |
|
||||||||| | |||||||| | ||| |||||||| |||||| ||| | ||||||||| |||||||||| ||||| |||||| |||| ||||||||| |
|
|
| T |
42117769 |
agagaggtcttataatttctctcgtttaatgaaagttatctacttttgtctcgtggtttt-tccccttattaattgagaggtttctacgt-aaatattgt |
42117866 |
T |
|
| Q |
279 |
gtgttcagtt |
288 |
Q |
| |
|
||||||||| |
|
|
| T |
42117867 |
atgttcagtt |
42117876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 66 - 344
Target Start/End: Complemental strand, 16183905 - 16183636
Alignment:
| Q |
66 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
165 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
16183905 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaatttgtctc |
16183816 |
T |
|
| Q |
166 |
tccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
264 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183815 |
tccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
16183716 |
T |
|
| Q |
265 |
acgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183715 |
acgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
16183636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 58 - 349
Target Start/End: Original strand, 30235043 - 30235339
Alignment:
| Q |
58 |
tagtgagag-aaaaatatagagaggaaaaatagtttctcctg-tgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtg |
153 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||||| ||||||||||| || | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30235043 |
tagtgagaggaaaaatatagagagaaaaattagtttctccttatgaggtttctcttacgtagtgttagtgtttgtattctcctatttataagagagagtg |
30235142 |
T |
|
| Q |
154 |
gtaattgtactctccttgtatttag-agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-ccccttatttg |
251 |
Q |
| |
|
||||||||||||||||| || ||| |||||||||||||||||||||| | ||| |||||||| ||||||||| ||||||||||||| ||||||||| | |
|
|
| T |
30235143 |
gtaattgtactctccttataaataggagagaggtcctgtaatttcttctagttattgaaagttttctactcttatcccgtggtttttttccccttattcg |
30235242 |
T |
|
| Q |
252 |
ttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||| || ||||||||||| |||||||||||| |||| |
|
|
| T |
30235243 |
ttgaggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcattttttattttagctgtgtaataatattttgctactctggtacccaaca |
30235339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 127 - 373
Target Start/End: Complemental strand, 8140183 - 8139940
Alignment:
| Q |
127 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
226 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||| | |||||||||||||| |||||||||| |||| |||| |
|
|
| T |
8140183 |
gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatctta |
8140086 |
T |
|
| Q |
227 |
ccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataata |
326 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
8140085 |
ccccatggttttctccccttatttgttgaggggtttccacataaa-tattgtgcgttcagtttctcttttctcatctcttattttagctgtgtgataata |
8139987 |
T |
|
| Q |
327 |
ttttgttactctggtacctaacagtggtatcagagcccttggttcgt |
373 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
8139986 |
ttttgttactctggtacccaacagtggtattagagccattggttcgt |
8139940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 163 - 429
Target Start/End: Complemental strand, 8138645 - 8138384
Alignment:
| Q |
163 |
ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt |
262 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||| |||||| |||||||| |
|
|
| T |
8138645 |
ctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttgtttgttaaggggttt |
8138546 |
T |
|
| Q |
263 |
ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagc |
362 |
Q |
| |
|
|||| | || || |||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||| ||||| |
|
|
| T |
8138545 |
ccacat-aattactgtgtgttaagtttttcttttctcgtctcttattttagctgcgtgataatactttgatactctgctacccaacagtggtattagagc |
8138447 |
T |
|
| Q |
363 |
ccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
429 |
Q |
| |
|
| ||||||||| | ||||||| || | |||| || ||||||||||||||||||||||||||| |
|
|
| T |
8138446 |
cattggttcgttgtcgttattctgccg----caactggtcgagtggtaagaaaaatcttagtatgct |
8138384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 346 - 434
Target Start/End: Original strand, 25441073 - 25441161
Alignment:
| Q |
346 |
aacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
434 |
Q |
| |
|
|||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25441073 |
aacagtggtatcagagccattgatttgtagttgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtg |
25441161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 336
Target Start/End: Complemental strand, 5102749 - 5102606
Alignment:
| Q |
191 |
taatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcc |
290 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||| || ||| |||||||||||||||||||| |||||| || || ||||||| ||| || ||| || |
|
|
| T |
5102749 |
taatttctcccacttagtaaaagttatctactcttgctccatgg-tttttccccttatttgttga-gggttttcatgt-aaatattatgtatttagtccc |
5102653 |
T |
|
| Q |
291 |
tc-ttttctcgtctcttattttagctgcgtgataatattttgttact |
336 |
Q |
| |
|
|| ||||||| ||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
5102652 |
tctttttctcatcttttattttagttgagtgataatattttgttact |
5102606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 349
Target Start/End: Complemental strand, 36528529 - 36528415
Alignment:
| Q |
234 |
gttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtt |
333 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||| ||||| || || |||||| |
|
|
| T |
36528529 |
gttttttttccttattcgtggaggggtttccacgtaaa-tattgtgtgttcaattcctctattctcatctcttattttagttgcgtaattttactttgtt |
36528431 |
T |
|
| Q |
334 |
actctggtacctaaca |
349 |
Q |
| |
|
|||||| |||| |||| |
|
|
| T |
36528430 |
actctgatacccaaca |
36528415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 66 - 349
Target Start/End: Complemental strand, 27500 - 27226
Alignment:
| Q |
66 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
165 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||||| |||||||| ||| |
|
|
| T |
27500 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattcacctatttc-aagagaga-tggtaatttgtctc |
27411 |
T |
|
| Q |
166 |
tccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
264 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27410 |
tccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
27311 |
T |
|
| Q |
265 |
acgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27310 |
acgtaaagtattgtgtgttcagtttctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
27226 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 66 - 349
Target Start/End: Original strand, 46191274 - 46191546
Alignment:
| Q |
66 |
gaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagtttgtattctcctatttataagagagagtggtaattgtactc |
165 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
46191274 |
gaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctagt--------gttagtattctcctatttc-aagagagag-ggtaatttgtctc |
46191363 |
T |
|
| Q |
166 |
tccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttcc |
264 |
Q |
| |
|
||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46191364 |
tccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttctctactcttgtcccgtggttttttccccttatttgttgaggggtttcc |
46191463 |
T |
|
| Q |
265 |
acgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
46191464 |
acgtaaaatat--tgtgttcagttcctcttttctcgtctcttattttagctgcatgataatattttgttactctggttcctaaca |
46191546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 163 - 344
Target Start/End: Complemental strand, 30697300 - 30697120
Alignment:
| Q |
163 |
ctctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggttt |
262 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
30697300 |
ctctccttgtatttagaaagaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggttt |
30697201 |
T |
|
| Q |
263 |
ccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
344 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30697200 |
ccacgt-aaatattttgtgttaagttcctcttttctcgtctcttatgttagctgcgtgataatattttgttactctagtacc |
30697120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 163 - 349
Target Start/End: Original strand, 4130215 - 4130401
Alignment:
| Q |
163 |
ctctccttgtatttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtt |
261 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
4130215 |
ctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagggatt |
4130314 |
T |
|
| Q |
262 |
tccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
349 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
4130315 |
tccacgt-aaattttgtgtgttcagttcctcttttctcgtcacttattttagttgcgtgataatattttgttactcaagtacctaaca |
4130401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 30674865 - 30674787
Alignment:
| Q |
127 |
gtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttag |
207 |
Q |
| |
|
||||||||||||| | |||||||| || ||||||| |||||||| | ||||| ||||||| | ||||||||||||||||| |
|
|
| T |
30674865 |
gtattctcctatt-acaagagagaatg-taattgttctctccttatttttagtgagaggttgtataatttcttccacttag |
30674787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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