View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14728_low_14 (Length: 420)
Name: NF14728_low_14
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 99 - 241
Target Start/End: Original strand, 27732836 - 27732978
Alignment:
| Q |
99 |
gtattttaataatttaataatatcatgtacaaaagcttacctgcatttttaatttcttgtccaataggtacatccagatatgatccaataagtaaagagc |
198 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27732836 |
gtattttaataatttaataatatcacggacaaaagcttacctgcatttttaatttcttgtccaataggtacatccagatatgatccaataagtaaagagc |
27732935 |
T |
|
| Q |
199 |
tgtcagcactagcaagcttagcagccaatccatcagattcaaa |
241 |
Q |
| |
|
|||| ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
27732936 |
tgtcggcacttgccagcttagcagccaatccatcagattcaaa |
27732978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 298 - 402
Target Start/End: Complemental strand, 27733209 - 27733105
Alignment:
| Q |
298 |
gaaaagagtaagctagaaatcggtgatgcaagggcttatataaaagagaaggtggatgaagtggggagagatttttactttgggaagttgcaaggaagtt |
397 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
27733209 |
gaaaagagaaagccagaaattggtgatgcaagggcttatataaaagagcaggtggatgaagtggggagagctttttacttggggaagttgcaaggaagtt |
27733110 |
T |
|
| Q |
398 |
ctgaa |
402 |
Q |
| |
|
||||| |
|
|
| T |
27733109 |
ctgaa |
27733105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 27732759 - 27732800
Alignment:
| Q |
59 |
gacaaaccaacaaatcagacagtaatttgagcctcgaaaggt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | |||||| |
|
|
| T |
27732759 |
gacaaagcaacaaatcagacagtaatttgagcccccaaaggt |
27732800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 27733259 - 27733223
Alignment:
| Q |
260 |
gggatgtgtctacgagctatattagctcaacttattc |
296 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
27733259 |
gggatgtgtctatgagctatagtagctcaacttattc |
27733223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University