View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_15 (Length: 415)
Name: NF14728_low_15
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_15 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 3620686 - 3621074
Alignment:
| Q |
12 |
cgaagaatatcttgaaaagagtgttctgaacactatataacagggcatataaccaaaaagaa---atattgaaaatcatgagaacataccataacgacag |
108 |
Q |
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| T |
3620686 |
cgaacaatatcttgaaaagagtgttcggaacattatataacagggtataaaacaaaaaaatatatatattaaaagtcacgagaacataccataacgacgg |
3620785 |
T |
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| Q |
109 |
ctttgatgttatcattggtgagatcaattgagagacgaccctgattttttaactcaagtaacacgtcaactatatccttctcttcatcatctttcttcct |
208 |
Q |
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| T |
3620786 |
ctttgatgtgattattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaactatatccttctcttcatcatcttttttcct |
3620885 |
T |
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| Q |
209 |
attattaggattgagatgttccttaagcacttgttcaaaaaactcatccaaagccttgaaagtgttgtcaacacgagcaattgccccggtgagtttatca |
308 |
Q |
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| T |
3620886 |
attattaggattgagatgttccttgaggacttgttcaaagaactcatccaaagccttgaaagtgttgtcaacacgagcaattgcccctgtgagtttatca |
3620985 |
T |
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| Q |
309 |
atccaccccaagaaaggaatataatctgaaacaaaaaatgaaaggaaaatagcttgtgtctcattaagtaaaccatggaacctgctttt |
397 |
Q |
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| T |
3620986 |
acccaccccataaaaggaatataatctgaaacaaaaaaggaaaggaaaatagcttgtgtctcattaagtaaaccatggaacctgctttt |
3621074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 90 - 397
Target Start/End: Original strand, 3631164 - 3631471
Alignment:
| Q |
90 |
gaacataccataacgacagctttgatgttatcattggtgagatcaattgagagacgaccctgattttttaactcaagtaacacgtcaactatatccttct |
189 |
Q |
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| T |
3631164 |
gaacataccataaggacggatttgatgtgatcattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaactatatccttct |
3631263 |
T |
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| Q |
190 |
cttcatcatctttcttcctattattaggattgagatgttccttaagcacttgttcaaaaaactcatccaaagccttgaaagtgttgtcaacacgagcaat |
289 |
Q |
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| T |
3631264 |
cttcttcatctttcttccgattattaggattgagatgttcttgaaggacttgttcaagaaactcatccaaagccttgaaagtcttgtcaacacgagcatt |
3631363 |
T |
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| Q |
290 |
tgccccggtgagtttatcaatccaccccaagaaaggaatataatctgaaacaaaaaatgaaaggaaaatagcttgtgtctcattaagtaaaccatggaac |
389 |
Q |
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| T |
3631364 |
tgccccagtgagtttatcaatccaccccataaaaggaatatgatctgaaacaaagaaggaaaggaaaatagcttctgtctcatgaagtaaattatggaac |
3631463 |
T |
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| Q |
390 |
ctgctttt |
397 |
Q |
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| T |
3631464 |
ctgctttt |
3631471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 90 - 397
Target Start/End: Complemental strand, 14921 - 14614
Alignment:
| Q |
90 |
gaacataccataacgacagctttgatgttatcattggtgagatcaattgagagacgaccctgattttttaactcaagtaacacgtcaactatatccttct |
189 |
Q |
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||||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14921 |
gaacataccataaggacggatttgatgtgatcattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaactatatccttct |
14822 |
T |
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| Q |
190 |
cttcatcatctttcttcctattattaggattgagatgttccttaagcacttgttcaaaaaactcatccaaagccttgaaagtgttgtcaacacgagcaat |
289 |
Q |
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| T |
14821 |
cttcttcatctttcttccgattattaggattgagatgttcttgaaggacttgttcaagaaactcatccaaagccttgaaagtcttgtcaacacgagcatt |
14722 |
T |
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| Q |
290 |
tgccccggtgagtttatcaatccaccccaagaaaggaatataatctgaaacaaaaaatgaaaggaaaatagcttgtgtctcattaagtaaaccatggaac |
389 |
Q |
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| T |
14721 |
tgccccagtgagtttatcaatccaccccataaaaggaatatgatctgaaacaaagaaggaaaggaaaatagcttctgtctcatgaagtaaattatggaac |
14622 |
T |
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| Q |
390 |
ctgctttt |
397 |
Q |
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|||||||| |
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| T |
14621 |
ctgctttt |
14614 |
T |
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