View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_16 (Length: 403)
Name: NF14728_low_16
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 24927245 - 24926855
Alignment:
| Q |
18 |
aaaatgtgtttgtttcatttactaaagtaccctatcaatagcagttaggtgaattaagattcagttaatgagtttatatgcagcatagcaattttcctct |
117 |
Q |
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| T |
24927245 |
aaaatgtgtttgtttcatttactaaagtaccctatcaatagcagttaggtgaattaagattctgttaatgagtgtatatgcagcatagcaattttcctct |
24927146 |
T |
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| Q |
118 |
ttgatt------cttctaccttactcaaaaccttatactttcatttcttttatattccaactagtagtaatgcattatgtgttttttagttgatttaatt |
211 |
Q |
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|||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24927145 |
ttgaattaagatcttctaccttactcaaaaccttgtactttcatttcttttatattccaactagtagtaatgcattatgtgttttttagttgatttaatt |
24927046 |
T |
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| Q |
212 |
cattcgacacatacacctttcttgtgttgcaggtagataatatccaaatagaacctagttcaagaagcaatgtagtttctaagcatcatgcatcaatgtc |
311 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24927045 |
cattcgacacatacacctt-cttgtgttgcaggtagataatatccaaatagaacctagttcaagaagcaatgtagtttctaagcatcatgcatcaatgtc |
24926947 |
T |
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| Q |
312 |
aagttttggttcttccactaatggcagtaagaggatttcttcgtcaaggggtccatctccagctacttcaagatcttcaactccatctggaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24926946 |
aagttttggttcttccactaatggcagtaagaggatttcttcgtcaaggggtccatctccagctacttcaagatcttcaactccatctggaa |
24926855 |
T |
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