View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_17 (Length: 386)
Name: NF14728_low_17
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 19065259 - 19065570
Alignment:
| Q |
1 |
ctcttgagcctgagccatgtccacctttatttcttacccagctttcagcactcgggccgggtctcggtttccattcaacacttattttgaatttttctgt |
100 |
Q |
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| T |
19065259 |
ctcttgagcctgagccatgtccacctttatttcttacccagctttcagcactcggcccgggtctcggtttccattcaacacttattttgaatttttctgt |
19065358 |
T |
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| Q |
101 |
tgcgccaactgaaatttaacgaacactttttattaaatatagtaaaagaagaaagaaattgtttatacagtgtaatatatatttacacacacactattta |
200 |
Q |
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| T |
19065359 |
tgcgccaactgaaatttaacgaacactttttattaaatatagtaaaagaagaaagaaattgtttatgcagtgtaatatatatttacacacacactattta |
19065458 |
T |
|
| Q |
201 |
ccaattaccatgtttggatggcgcaattgccacaactgagnnnnnnntcagtgcacacgaaaatacaaagacaaaatactttgttttcatccttgatcaa |
300 |
Q |
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| T |
19065459 |
ccaattaccatgtttggatggcgcaattgccacaacggagaaaaaaatcagtgcacacgaaaatacaaagacaaaatactttgttttcatccttgatcaa |
19065558 |
T |
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| Q |
301 |
ctaagagtagat |
312 |
Q |
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| T |
19065559 |
ttaagagtagat |
19065570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 19065560 - 19065607
Alignment:
| Q |
332 |
taagagtagattgtaactaactataaatacgatcaatagctatttata |
379 |
Q |
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| T |
19065560 |
taagagtagattgtaactaactataaacacaatcaatagctatatata |
19065607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 17179470 - 17179399
Alignment:
| Q |
82 |
ttattttgaatttttctgttgcgccaactgaaatttaacgaacactttttattaaatatagtaaaagaagaa |
153 |
Q |
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| T |
17179470 |
ttattttggattcttttgttgcaccaactgcaagtcaacaaacaatttttatcaaatatagtaaaagaagaa |
17179399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 304
Target Start/End: Complemental strand, 36253232 - 36253202
Alignment:
| Q |
274 |
aaatactttgttttcatccttgatcaactaa |
304 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
36253232 |
aaatactttgttttcatccttgatcaactaa |
36253202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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