View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14728_low_18 (Length: 385)

Name: NF14728_low_18
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14728_low_18
NF14728_low_18
[»] chr8 (4 HSPs)
chr8 (15-261)||(41375621-41375867)
chr8 (276-366)||(41375498-41375588)
chr8 (290-349)||(10621383-10621442)
chr8 (276-346)||(30659984-30660054)
[»] chr7 (3 HSPs)
chr7 (276-349)||(44662457-44662530)
chr7 (276-346)||(46195949-46196019)
chr7 (277-349)||(6548707-6548778)
[»] chr2 (3 HSPs)
chr2 (276-349)||(24202178-24202251)
chr2 (277-317)||(38790090-38790130)
chr2 (303-340)||(40473543-40473580)
[»] chr6 (1 HSPs)
chr6 (288-340)||(7234002-7234054)
[»] chr3 (3 HSPs)
chr3 (278-349)||(9489505-9489576)
chr3 (290-340)||(27394544-27394594)
chr3 (288-340)||(40160772-40160824)
[»] chr1 (1 HSPs)
chr1 (293-349)||(32660858-32660914)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 41375867 - 41375621
Alignment:
Q  15 tcaaaaagcttaaaaatccaatatgttttcatgatatgttcttcttctttggcatgaacagattcccaaccaggacgaaaatggatgaaaactgcaatat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41375867 tcaaaaagcttaaaaatccaatatgttttcatgatatgttcttcttctttggcatgaacagattcccaaccaggacgaaaatggattaaaactgcaatat 41375768  T
Q  115 ctatttgacagacgaggacgagaactcgatgaagatgagtgaaaggaagggaaagactagtatctgatttcttgtgttaggggtttaaattnnnnnnnnn 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||             
T  41375767 ctatttgacagacgaggacgagaactcgatgaagatgagtgaaaggaaggggaagactaggttctgatttcttgtgttaggggtttaaattaaaaaatga 41375668  T
Q  215 nnnnnnctaaatctaaactgttaattaaattcgacggctcatgttaa 261  Q
          |||||||||||||||||||||||| ||||||||||||||||    
T  41375667 aaaaaactaaatctaaactgttaattaaatccgacggctcatgttaa 41375621  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 41375588 - 41375498
Alignment:
Q  276 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgcaaatgaactaagctcaca 366  Q
    |||||||||| | |||||||||||||||||| ||||||||   ||||||||| | ||||| |||||||||| ||| ||| |||||||||||    
T  41375588 tggagaaattcactttaaaggtgaaatagtgaggtgtccggagttcaaaccccaacccctacatacataatacaagtgagctaagctcaca 41375498  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 10621383 - 10621442
Alignment:
Q  290 ttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 349  Q
    |||||||||||| | ||||||||||| | |||||||||   |||||||||||||||||||    
T  10621383 ttaaaggtgaaaaaatggggtgtccggggttcaaaccctgacccctgcatacataatgca 10621442  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 346
Target Start/End: Complemental strand, 30660054 - 30659984
Alignment:
Q  276 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataat 346  Q
    |||| |||||||  |||||||||||||||||||||||||| | ||  |||||   ||||||||||||||||    
T  30660054 tggaaaaatttaccttaaaggtgaaatagtggggtgtccggggtttgaaccccgacccctgcatacataat 30659984  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 276 - 349
Target Start/End: Original strand, 44662457 - 44662530
Alignment:
Q  276 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 349  Q
    |||||||||| |  |||||||||||||||||||||||||| | ||| |||||  ||||||||||||||||||||    
T  44662457 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgca 44662530  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 346
Target Start/End: Complemental strand, 46196019 - 46195949
Alignment:
Q  276 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataat 346  Q
    |||||||||| |  |||||||||||||||||||||||||| | |||||||||   ||||||||||||||||    
T  46196019 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcaaaccccgacccctgcatacataat 46195949  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 6548707 - 6548778
Alignment:
Q  277 ggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 349  Q
    ||||||||| |  ||||||||||||||||||||||||||   ||| |||||  | ||||||||||||||||||    
T  6548707 ggagaaattcaccttaaaggtgaaatagtggggtgtccggagttcgaaccc-cggccctgcatacataatgca 6548778  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 24202251 - 24202178
Alignment:
Q  276 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 349  Q
    |||||||||| |  |||||||||||||||||||||||||| | ||| |||||  ||||||||||||||||||||    
T  24202251 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgca 24202178  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 38790090 - 38790130
Alignment:
Q  277 ggagaaatttattttaaaggtgaaatagtggggtgtccgag 317  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  38790090 ggagaaattcatcttaaaggtgaaatagtggggtgtccgag 38790130  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 40473543 - 40473580
Alignment:
Q  303 agtggggtgtccgagattcaaacccaagcccctgcata 340  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  40473543 agtggggtgtccgaggttcaaaccccagcccctgcata 40473580  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 7234054 - 7234002
Alignment:
Q  288 ttttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 340  Q
    |||| ||||||||  ||||||||||||||| ||||||||| ||||||||||||    
T  7234054 ttttcaaggtgaataagtggggtgtccgaggttcaaaccccagcccctgcata 7234002  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 9489576 - 9489505
Alignment:
Q  278 gagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 349  Q
    |||||||| || |||||||||||||||| |||| |||  | ||| |||||  ||||||||||||||||||||    
T  9489576 gagaaattcatcttaaaggtgaaatagtagggtatccagggttcgaaccccggcccctgcatacataatgca 9489505  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 27394594 - 27394544
Alignment:
Q  290 ttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 340  Q
    |||||||||||  ||||||||||||| | ||||||||| ||||||||||||    
T  27394594 ttaaaggtgaataagtggggtgtccggggttcaaaccccagcccctgcata 27394544  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 40160824 - 40160772
Alignment:
Q  288 ttttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 340  Q
    |||||||||||||  ||||||||||||| | ||||||||| |||||| |||||    
T  40160824 ttttaaaggtgaataagtggggtgtccggggttcaaaccccagccccggcata 40160772  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 32660914 - 32660858
Alignment:
Q  293 aaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 349  Q
    ||||||||| ||||||||||||| | ||  ||||| |||||||||||| ||||||||    
T  32660914 aaggtgaaaaagtggggtgtccggggtttgaaccccagcccctgcatatataatgca 32660858  T

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