View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_19 (Length: 384)
Name: NF14728_low_19
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 125216 - 125534
Alignment:
| Q |
1 |
tagatataaaatataattctttcattaacacaatagctcaattaatgtgtattaaagctttannnnnnnncccaagtagataagtgaccagaatttcacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
125216 |
tagatataaaatataattctttcattaacacaatagctcaattaatgtgtattaaagctttatttttttttccaagtagttaagtgaccagaatttcacc |
125315 |
T |
|
| Q |
101 |
atttaatgtgaataattggggcatctatgatttgaacctcaacccctacatattatttgtgttctcaatttcttattattaaaaatatattttattaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
125316 |
atttaatgtgaataattggggcatctatgatttgaacctcaacccctacatattatttgtattctcaatttattattattaaaaatatattttattaaaa |
125415 |
T |
|
| Q |
201 |
atcgtaaaggtccacctttggaccaattggaaatgtcctattttttgtgtgaactagctgtgcccgtaaaaataattcataaaaaatataatattagcta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
125416 |
atcgtaaaggtccacctttggaccaattggaaatgtcctattttttgtgtgaactagttgtgcccgtaaaaataattcataaaaaatataatattagcta |
125515 |
T |
|
| Q |
301 |
ttgttgaatgaatcatttg |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
125516 |
ttgttgaatgaatcatttg |
125534 |
T |
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