View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_20 (Length: 378)
Name: NF14728_low_20
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 51257126 - 51257481
Alignment:
| Q |
18 |
tccttgaatactctcttatacactactgtcaacttccttccccctttcctccctctgttccctttttatattccatccctatcataactgtcataactgc |
117 |
Q |
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| T |
51257126 |
tccttgaatactctcgtatacactactgtcaacttccttccctctttcctccctctgttccctttttatattccatccctatcataactgtcataactgc |
51257225 |
T |
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| Q |
118 |
atgcgactatgactaccctacttgtagaactgggctgttatttgtttcagatgatacaactgaatattgtaccctgcttcccttcatattcctcctaata |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51257226 |
atgtgactatgactaccctacttgtagaactgggctgttatttgtttcagatgatacaactgaatattgtaccctgcttcccttcatattcctcctaata |
51257325 |
T |
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| Q |
218 |
tactcnnnnnnnnnnatcaatggtcccatatcaaagataatccaaataagtaggagcaagggtgtagatgcttaacatcagtggtgtcaaatattgcttg |
317 |
Q |
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| T |
51257326 |
aacac--atttttttatcaatggtcccatatcaaagataatccaaataagtaggagcaagggtgtatatgcttaacatcagtggtgtcaaatattgcttg |
51257423 |
T |
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| Q |
318 |
ctctaaatattgtttcttgcttgttagtgattaaaaatctcttataactctgtgctgc |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51257424 |
ctctaaatattgtttcttgcttgttagtgattaaaaatctcttataactctgttctgc |
51257481 |
T |
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