View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_22 (Length: 351)
Name: NF14728_low_22
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 2500270 - 2500602
Alignment:
| Q |
1 |
ggaagacataagtagttatactcaatcaaaagacaagcaatcaaccttagtagtgggtttttgcatcaattaagccatatggatagtatattagtcgact |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2500270 |
ggaagacataagtagttatactcaatcaaaaggcaagcaatcaaccttagtagtgggtttttgcatcaattaagccatatggatagtatattagtcgact |
2500369 |
T |
|
| Q |
101 |
aagtttagaacatgcatgaagtcgtatttcccaaagtaaattatggaggacaagattggttgatgcgaaagttaataacttagaaaatcctaaacaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2500370 |
aagtttagaacatgcatgaagtcgtatttcccaaagtaaattatggaggacaaggttggttgatgcgaaagttaataacttagaaaatcctaaacaaatt |
2500469 |
T |
|
| Q |
201 |
tggattgtaactcaggcgacgaggtaattatctttattcttatgttagccatgatcttaaataatgtaatgggtgagtcagtgagccaagaacatggaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2500470 |
tggattgtaactcaggcgacgaggtaattatctttattcttatgttagccatgatcttaaataatgtaatgggtgagtcagtgagccaagaacatggaaa |
2500569 |
T |
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| Q |
301 |
acaatgttaatatgggtttcctagttaccctga |
333 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
2500570 |
acaatgttaatatgggttgcctagttaccctga |
2500602 |
T |
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