View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_23 (Length: 343)
Name: NF14728_low_23
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 23111134 - 23110820
Alignment:
| Q |
15 |
acaactttactctcagtccccctttttgaaaaagatatggagtatgtttgaacaactccaacacaaaaatcaccatgggaggtgactaggggatgcttat |
114 |
Q |
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|||||| || |||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
23111134 |
acaactataatctcagtcccccttgttgaaaaagttatggattatgtttgaacaactacaacacaaaaatcaacatgggaggtgactatgggatgcttat |
23111035 |
T |
|
| Q |
115 |
tctttctcatgactatggaggttctgtgctttgcaaaatgttggggtggagtggatctgcgttgcggccattgcgctgcacgggggcagctaaatcacgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23111034 |
tctttctcatgactatggaggttctgtgctttgcaaaatgttggggtggagtagatctgcgttgcggccattgcgctgcacgggggcagctaaatcacgg |
23110935 |
T |
|
| Q |
215 |
aggaatggtagagaaattgtggagaagatgggaacaacgaataagataaatnnnnnnnnnnnnnnttccctcattttaggtttgaagctccgcggtagtt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23110934 |
aggaatggtagagaaattgtggagaagatgggaacaacgaataagataaataaaaaactaaaaaattccctcattttaggtttgaagctccgcggtagtt |
23110835 |
T |
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| Q |
315 |
aactgccgaagttcc |
329 |
Q |
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||||||||||||||| |
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| T |
23110834 |
aactgccgaagttcc |
23110820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 23117515 - 23117557
Alignment:
| Q |
287 |
attttaggtttgaagctccgcggtagttaactgccgaagttcc |
329 |
Q |
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|||| |||||||||| ||| ||||||||||||||||||||||| |
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| T |
23117515 |
atttcaggtttgaaggtccacggtagttaactgccgaagttcc |
23117557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 123 - 263
Target Start/End: Original strand, 56332125 - 56332265
Alignment:
| Q |
123 |
atgactatggaggttctgtgctttgcaaaatgttggggtggagtggatctgcgttgcggccattgcgctgcacgggggcagctaaatcacggaggaatgg |
222 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
56332125 |
atgactatggaggttctgtgcttcgcaaaatattggggtggagtggatctttgttgcggccatagcgctgcgcgggggcagctaaatcacggaggaatgg |
56332224 |
T |
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| Q |
223 |
tagagaaattgtggagaagatgggaacaacgaataagataa |
263 |
Q |
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||||||||||| |||||||||||| |||||||||||||||| |
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| T |
56332225 |
tagagaaattgcggagaagatggggacaacgaataagataa |
56332265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 56331587 - 56331690
Alignment:
| Q |
25 |
tctcagtccccctttttgaaaaagatatggagtatgtttgaacaactccaacacaaaaatcaccatgggaggtgactaggggatgcttattctttctcat |
124 |
Q |
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|||||||||||||| |||| |||| |||||| ||||||||||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |
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| T |
56331587 |
tctcagtcccccttgttgagaaagttatggattatgtttgaacaattacaacacaaaaatcaacatgggacgtgactatgggatgcttattctttctcat |
56331686 |
T |
|
| Q |
125 |
gact |
128 |
Q |
| |
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|||| |
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|
| T |
56331687 |
gact |
56331690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 48343402 - 48343365
Alignment:
| Q |
292 |
aggtttgaagctccgcggtagttaactgccgaagttcc |
329 |
Q |
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|||||||||||||||||| ||||||||| ||||||||| |
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| T |
48343402 |
aggtttgaagctccgcggcagttaactgtcgaagttcc |
48343365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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