View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_24 (Length: 336)
Name: NF14728_low_24
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 37219807 - 37220125
Alignment:
| Q |
1 |
tgtatatgttcgaacacgagtatttgcagcttaacatatttttcatacctattcaacaccaacttgttctattgcgaatacaaatatctttttgtgacct |
100 |
Q |
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| T |
37219807 |
tgtatatgttcgaacacgagtatttgcagcttaacatatttttcatacctattcaacaccaacttgttctattgcgaatacaaatatctttttgtgacct |
37219906 |
T |
|
| Q |
101 |
tgtatacttgataaattacagagaatatcacatttttataaatattatatttttcaattaccacatattcccctctttattttactctaaagtcaaagtc |
200 |
Q |
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| T |
37219907 |
tgtatacttgataaatttcagagaatatcatatttttataaatattatatttttcaattaccacatattcccctctttattttactctaaagtcaaagtc |
37220006 |
T |
|
| Q |
201 |
aattgtaaaccctttccaaggtgacgaatatgtcctcacacaacctgcatccataggaattaaacaataaacttttcgtacttacatatttggatttatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37220007 |
aattgtaaaccctttccaaggtgacgaatatgtcctcacacaacctgcatccataggaattaaacaataaacttttcgtacttacatatttggatttatc |
37220106 |
T |
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| Q |
301 |
tacttaaattaaaacatat |
319 |
Q |
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||||||||||||||||||| |
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| T |
37220107 |
tacttaaattaaaacatat |
37220125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 37206552 - 37206613
Alignment:
| Q |
256 |
ggaattaaacaataaacttttcgtacttacatatttggatttatctacttaaattaaaacatat |
319 |
Q |
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| T |
37206552 |
ggaattaaaaaataaacttt--gtacttacatatttggatttatctacataaattagaacatat |
37206613 |
T |
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