View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14728_low_25 (Length: 333)

Name: NF14728_low_25
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14728_low_25
NF14728_low_25
[»] chr7 (10 HSPs)
chr7 (18-173)||(36439954-36440109)
chr7 (177-325)||(24825783-24825932)
chr7 (172-325)||(32793006-32793160)
chr7 (163-321)||(37873406-37873565)
chr7 (172-325)||(11324271-11324425)
chr7 (177-321)||(37879077-37879222)
chr7 (173-241)||(9402559-9402627)
chr7 (172-247)||(24825557-24825632)
chr7 (177-247)||(32792786-32792856)
chr7 (173-240)||(11324052-11324119)
[»] chr8 (4 HSPs)
chr8 (172-325)||(3068772-3068926)
chr8 (177-325)||(3305842-3305991)
chr8 (172-247)||(3069076-3069151)
chr8 (172-247)||(3305617-3305692)
[»] chr4 (13 HSPs)
chr4 (172-325)||(41315897-41316051)
chr4 (177-325)||(23254600-23254749)
chr4 (177-325)||(15874231-15874380)
chr4 (172-325)||(42305903-42306056)
chr4 (177-325)||(20878696-20878845)
chr4 (177-325)||(38484464-38484614)
chr4 (168-325)||(55893208-55893363)
chr4 (177-247)||(23254380-23254450)
chr4 (171-247)||(55893473-55893549)
chr4 (177-247)||(42306206-42306276)
chr4 (172-247)||(15874530-15874605)
chr4 (177-239)||(41316208-41316270)
chr4 (177-242)||(38485175-38485240)
[»] chr3 (11 HSPs)
chr3 (177-325)||(40560682-40560831)
chr3 (177-325)||(33794437-33794585)
chr3 (171-325)||(20124652-20124808)
chr3 (177-325)||(5048007-5048156)
chr3 (182-325)||(2439993-2440137)
chr3 (177-325)||(14783738-14783887)
chr3 (167-325)||(31724346-31724505)
chr3 (172-247)||(5048306-5048381)
chr3 (177-247)||(2439773-2439843)
chr3 (163-242)||(14784027-14784107)
chr3 (172-240)||(31724657-31724725)
[»] scaffold0291 (2 HSPs)
scaffold0291 (177-325)||(11278-11427)
scaffold0291 (172-325)||(10952-11106)
[»] chr5 (5 HSPs)
chr5 (177-325)||(31155565-31155714)
chr5 (177-322)||(31155896-31156042)
chr5 (177-322)||(39761540-39761686)
chr5 (177-247)||(39760427-39760497)
chr5 (177-247)||(31156195-31156265)
[»] chr1 (10 HSPs)
chr1 (177-325)||(7709925-7710074)
chr1 (172-325)||(34492452-34492606)
chr1 (177-325)||(52331630-52331779)
chr1 (177-325)||(37646880-37647029)
chr1 (177-312)||(13618337-13618473)
chr1 (177-293)||(13618539-13618656)
chr1 (172-247)||(52331405-52331480)
chr1 (177-247)||(7709703-7709773)
chr1 (172-240)||(13618254-13618322)
chr1 (177-239)||(34492240-34492302)
[»] chr2 (4 HSPs)
chr2 (172-325)||(12414060-12414214)
chr2 (172-325)||(12426120-12426274)
chr2 (172-321)||(4731910-4732060)
chr2 (177-247)||(4731718-4731788)
[»] scaffold0428 (2 HSPs)
scaffold0428 (177-325)||(7493-7642)
scaffold0428 (177-247)||(7777-7847)
[»] chr6 (13 HSPs)
chr6 (177-325)||(16766292-16766441)
chr6 (162-325)||(33746700-33746864)
chr6 (177-325)||(16368823-16368972)
chr6 (177-322)||(6851252-6851398)
chr6 (171-325)||(11242289-11242444)
chr6 (199-325)||(20582831-20582958)
chr6 (177-247)||(20582639-20582709)
chr6 (172-247)||(29846981-29847056)
chr6 (177-247)||(16766562-16766632)
chr6 (177-325)||(11246274-11246423)
chr6 (177-239)||(33746961-33747023)
chr6 (172-240)||(16368639-16368707)
chr6 (172-240)||(29846787-29846855)
[»] scaffold0184 (2 HSPs)
scaffold0184 (177-317)||(7183-7325)
scaffold0184 (172-247)||(7016-7091)
[»] scaffold0032 (2 HSPs)
scaffold0032 (213-327)||(32959-33076)
scaffold0032 (172-247)||(33218-33293)
[»] scaffold1408 (1 HSPs)
scaffold1408 (177-288)||(1747-1859)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 36439954 - 36440109
Alignment:
Q  18 gcttatacttgaaatttgattccttttccaagcagtaacccgcctcttcagtccacccaaattcttcgtccatggaccaaatgattgagccatcacgagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36439954 gcttatacttgaaatttgattccttttccaagcagtaacccgcctcttcagtccacccaaattcttcgtccatggaccaaatgattgagccatcacgagg 36440053  T
Q  118 agtaacactaagcaagcatgaaatggacaaatggagtggtgctttaatattttgaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36440054 agtaacactaagcaagcatgaaatggacaaatggagtggtgctttaatattttgaa 36440109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 24825932 - 24825783
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  |||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||| |||       ||||||||||    
T  24825932 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgaaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtctttt 24825833  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  24825832 aaaaatacccctgggcccatttaagtcataacaagtcaccaaaatgccta 24825783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 172 - 325
Target Start/End: Complemental strand, 32793160 - 32793006
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgt 270  Q
    |||| |||||||||||||||||||||  ||||||   ||||||||||||||||||||||||||||||||||||||| |||||||  ||       |||||    
T  32793160 aaggcttaaatattgcactcgtccctgcaaatatagcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaaatctgt 32793061  T
Q  271 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  32793060 cttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgccta 32793006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 163 - 321
Target Start/End: Original strand, 37873406 - 37873565
Alignment:
Q  163 aatattttgaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnn 261  Q
    ||||| || |||| |||||||||||||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||| |||||||||  ||       
T  37873406 aatatattaaaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaa 37873505  T
Q  262 nnnntctgtcttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatg 321  Q
        |||||||||||||||||||||||||||||||||| | ||||||  |||||||||||    
T  37873506 aaattctgtcttttaaaaatacccctgggcccatttaattgatgacaggtcaccaaaatg 37873565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 172 - 325
Target Start/End: Complemental strand, 11324425 - 11324271
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgt 270  Q
    |||| |||||||||||| ||||||||  |||||||   |||||||||||||||||||||||||||||||||||||| ||| ||  |||       |||||    
T  11324425 aaggcttaaatattgcattcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaaatcaatctccgcaaaaaaatctgt 11324326  T
Q  271 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  11324325 cttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgccta 11324271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 321
Target Start/End: Complemental strand, 37879222 - 37879077
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||| ||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||  ||       ||||||||||    
T  37879222 ttaaatattgtactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcaatccctgcaaaaaattctgtctttt 37879123  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatg 321  Q
    |||||||||||||||||||||||| | ||||||  |||||||||||    
T  37879122 aaaaatacccctgggcccatttaattgatgacaggtcaccaaaatg 37879077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 9402559 - 9402627
Alignment:
Q  173 aggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaat 241  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  9402559 aggtttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaat 9402627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 24825557 - 24825632
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||| |||||||||||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||    
T  24825557 aaggcttaaatattgcactcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaa 24825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 32792786 - 32792856
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    ||||||||||||||||||| |  |||||||  |||||||||||||||||||||||||||||||||||||||    
T  32792786 ttaaatattgcactcgtccttgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaa 32792856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 11324052 - 11324119
Alignment:
Q  173 aggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaa 240  Q
    |||||||||||||||||||||||||  |||||||  ||| ||||||||| |||| ||||||| |||||    
T  11324052 aggtttaaatattgcactcgtccctgcaaatatggcccgattaagttttcgtccctgtaaaaaaaaaa 11324119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 172 - 325
Target Start/End: Original strand, 3068772 - 3068926
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgt 270  Q
    |||| |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       |||||    
T  3068772 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 3068871  T
Q  271 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  3068872 cttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgccta 3068926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 3305991 - 3305842
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  |||||||  |||||||||||||  ||||||||||||||||||| |||| ||||||| |||       ||||||||||    
T  3305991 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcttccttgtaaaataaaaatttagaaatcagtccccgcaaaaaaatctgtctttt 3305892  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  3305891 aaaaatacccctgtgcccatttaagtcatgacaagtcaccaaaatgccta 3305842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 3069151 - 3069076
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||| |||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3069151 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaa 3069076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 3305617 - 3305692
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||| |||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3305617 aaggcttaaatattgaactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaa 3305692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 172 - 325
Target Start/End: Original strand, 41315897 - 41316051
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgt 270  Q
    |||| |||||||||||| ||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       |||||    
T  41315897 aaggcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 41315996  T
Q  271 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41315997 cttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 41316051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 23254749 - 23254600
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       ||||||||||    
T  23254749 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtctttt 23254650  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||| ||||    
T  23254649 aaaaatactcctgggctcatttaagtcatgacaagtcaccaaaataccta 23254600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 15874231 - 15874380
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| |||       | ||||||||    
T  15874231 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatttgtctttt 15874330  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||||||||| |||||||| |||||||| |||||||||||||||    
T  15874331 aaaaatacccctgggcgcatttaaggcatgacaagtcaccaaaatgccta 15874380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 172 - 325
Target Start/End: Original strand, 42305903 - 42306056
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgt 270  Q
    |||| |||||||||||||||||||||  ||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||| |||       |||||    
T  42305903 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtcctcgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 42306002  T
Q  271 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  42306003 cttttaaaaatacccct-gtcccatttaagtcatgacaagtcaccaaaatgccta 42306056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 20878696 - 20878845
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 275  Q
    ||||| ||| ||||| |||||  |||||||  ||||||||||||||||||||||||||||||||||||||| ||||||| |||       ||| ||||||    
T  20878696 ttaaacattccactcatccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctatctttt 20878795  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20878796 aaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 20878845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 38484464 - 38484614
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgc-nnnnnnntctgtcttt 274  Q
    |||||||||||||||||| || ||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| | ||        |||||||||    
T  38484464 ttaaatattgcactcgtctctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtctttgcaaaaaaaatctgtcttt 38484563  T
Q  275 taaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  38484564 taaaaatatccctgggtccatttaagtcatgacaagtcaccaaaatgccta 38484614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 325
Target Start/End: Original strand, 55893208 - 55893363
Alignment:
Q  168 tttgaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaatcagtcctcgcnnnnnnntc 267  Q
    |||| ||| ||||||||||||| |||| ||  |||||||  ||||||||||||||||  |||||||||||||||||||||  | ||| |||       ||    
T  55893208 tttgtaggcttaaatattgcacccgtctctgcaaatatggcccgtttaagttttggttattgtaaaataaaaattcagaa--attccccgcaaaaaaatc 55893305  T
Q  268 tgtcttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||    
T  55893306 tgtcttttaaaaatagccctgggctcatttaagtcatgacaagtcaccaaaatgccta 55893363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 23254380 - 23254450
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||    
T  23254380 ttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaa 23254450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 55893549 - 55893473
Alignment:
Q  171 gaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    ||||| ||||||||||||||||||||| ||||||||   |||||||||||||||||||| |||||||||||||||||    
T  55893549 gaaggcttaaatattgcactcgtccctgtaaatatggctcgtttaagttttggtccttgaaaaataaaaattcagaa 55893473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 42306276 - 42306206
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||||||||| ||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||    
T  42306276 ttaaatattgaactcgtccctccaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaa 42306206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 15874605 - 15874530
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||| |||| ||||||||||||||||  |||||||  ||||||||||||||||| |||||||||||||||||||||    
T  15874605 aaggcttaagtattgcactcgtccctgcaaatatgccccgtttaagttttggtctttgtaaaataaaaattcagaa 15874530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 41316270 - 41316208
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaa 239  Q
    |||||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||    
T  41316270 ttaaatattgcactcgtccctgcaaatatggttcgtttaagttttggtccttgtaaaataaaa 41316208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 38485240 - 38485175
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaatt 242  Q
    |||||||||||||||||||||  |||||||| ||||||||||||| |||| ||||||| |||||||    
T  38485240 ttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtccctgtaaaaaaaaaatt 38485175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 40560831 - 40560682
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       ||||||||||    
T  40560831 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtctttt 40560732  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  40560731 aaaaatacccctgggcccatttaagtcatgacaaatcactaaaataccta 40560682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 33794437 - 33794585
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       ||||||||||    
T  33794437 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc-aaaaaatctgtctttt 33794535  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33794536 aaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 33794585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 171 - 325
Target Start/End: Original strand, 20124652 - 20124808
Alignment:
Q  171 gaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctg 269  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |||       | ||    
T  20124652 gaaggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatg 20124751  T
Q  270 tcttttaaaaatacccct-gggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  20124752 tcttttaaaaatacccctggggcccatttaagtaatgacaagtcaccaaaatgccta 20124808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 5048007 - 5048156
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |||       ||| ||||||    
T  5048007 ttaaatattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgcgaaaaaatctatctttt 5048106  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  5048107 aaaaatacccctgggtccatttaagtaatgacaagtcaccaaaatgccta 5048156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 182 - 325
Target Start/End: Complemental strand, 2440137 - 2439993
Alignment:
Q  182 tattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtcttttaaaaa 280  Q
    |||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |||       |||||||||||||||    
T  2440137 tattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtcttttaaaaa 2440038  T
Q  281 tacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||| |||||||||| ||||||| |||||||||||||||    
T  2440037 tacccctgggtccatttaagtaatgacaagtcaccaaaatgccta 2439993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 14783738 - 14783887
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||| ||||||  |||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| |||       | |||| |||    
T  14783738 ttaaatattgcacttgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatttgtcgttt 14783837  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  14783838 aaaaatgcccctgggcccatttaagtcatgacaagtcaccaaaatgccta 14783887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 167 - 325
Target Start/End: Original strand, 31724346 - 31724505
Alignment:
Q  167 ttttgaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnn 265  Q
    |||| |||| ||||||||||||||||||| |  |||||||  |||||||| |||||||||||||||||||||||||||| ||||||||| |||           
T  31724346 tttttaaggcttaaatattgcactcgtccatgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaa 31724445  T
Q  266 tctgtcttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    | |||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  31724446 tttgtcttttaaaaatacccttggacccatttaagtcatgacaagtcaccaaaatgccta 31724505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 5048381 - 5048306
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||| |||||||||||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||||||||    
T  5048381 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaa 5048306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 2439773 - 2439843
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||||||||||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||||||||    
T  2439773 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaa 2439843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 14784107 - 14784027
Alignment:
Q  163 aatattttgaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgt-aaaataaaaatt 242  Q
    ||||||||  ||| |||||||||||||||||||||  |||||||| ||||||||||||| |||| ||| ||||||||||||    
T  14784107 aatattttctaggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtccctgtaaaaataaaaatt 14784027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 31724725 - 31724657
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaa 240  Q
    |||| ||||||||||||||||||| |  |||||||  ||||||||||||| ||||  ||||| ||||||    
T  31724725 aaggcttaaatattgcactcgtccttgcaaatatggcccgtttaagtttttgtcccggtaaattaaaaa 31724657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 11427 - 11278
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||    
T  11427 ttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaatctgtctttt 11328  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||||||||||| || ||||||| ||| |||||||||||    
T  11327 aaaaatacccctgggcccatttaggttatgacaagtcatcaaaatgccta 11278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 172 - 325
Target Start/End: Original strand, 10952 - 11106
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgt 270  Q
    |||| |||||||||||||||||||||  |||||||  |||||||| |||||||||||||||||||||||||||| |||||||||||||       |||||    
T  10952 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaatctgt 11051  T
Q  271 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||||||||||||||||||||| || ||||||| ||| |||||||||||    
T  11052 cttttaaaaatacccctgggcccatttaggttatgacaagtcatcaaaatgccta 11106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 31155714 - 31155565
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||       | ||||||||    
T  31155714 ttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatgtctttt 31155615  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  31155614 aaaaatacccttgggcccatttaagtcatgacaagtcaccaaaatgccta 31155565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 177 - 322
Target Start/End: Original strand, 31155896 - 31156042
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    ||||||||||  |||||||||  ||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||       | ||||||||    
T  31155896 ttaaatattgatctcgtccctgcaaatatgacacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaatatgtctttt 31155995  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgc 322  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  31155996 aaaaatacccctgggcccatttaagttatgacaagtcaccaaaatgc 31156042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 322
Target Start/End: Complemental strand, 39761686 - 39761540
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||| ||||||  |||||||   |||||||||||||||||||||||||||||||||||||| |||||||  ||       ||| ||||||    
T  39761686 ttaaatattgcacttgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaaatctatctttt 39761587  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgc 322  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  39761586 aaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgc 39761540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 39760427 - 39760497
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39760427 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaa 39760497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 31156265 - 31156195
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  31156265 ttaaatattgcattcgtccctacaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaa 31156195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 7710074 - 7709925
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| ||       ||||||||||    
T  7710074 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagtccttgcaaaaaaatctgtctttt 7709975  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  7709974 aaaaatacccctgtgcccatttaagtcatgacaagtcaccaaaatgccta 7709925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 172 - 325
Target Start/End: Complemental strand, 34492606 - 34492452
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcaga-atcagtcctcgcnnnnnnntctgt 270  Q
    |||| ||||||||||||||||| |||  ||||||| || |||||||||||||||||||||||||||||||||||| |||||| | |||       ||| |    
T  34492606 aaggcttaaatattgcactcgttcctgcaaatatggtctgtttaagttttggtccttgtaaaataaaaattcagacatcagttcccgcaaaaaaatctat 34492507  T
Q  271 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34492506 cttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 34492452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 52331779 - 52331630
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  |||||||  |||||||||||||| ||||||||||||||||||| |||| ||||||| |||       | | ||||||    
T  52331779 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttgatccttgtaaaataaaaatttagaaatcagtccccgcaaaaaaatttatctttt 52331680  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  52331679 aaaaatacccctgggcccatttaagtcatgacaagtcatcaaaatgccta 52331630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 37647029 - 37646880
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||| ||||  ||  |||||||   ||||||||||||||||||||||||||||||||||| || |||||||  ||       ||||||||||    
T  37647029 ttaaatattgcattcgtttctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcaaaaatcagtccgtgcaaaaaaatctgtctttt 37646930  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37646929 aaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 37646880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 312
Target Start/End: Complemental strand, 13618473 - 13618337
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||| ||||||||  |||||||  |||||||||||||||||||||||||||||||| |||||| ||| |||  ||       ||||||||||    
T  13618473 ttaaatattgcattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaaatcagaaatcaatcccagcaaaaaaatctgtctttt 13618374  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatc 312  Q
    |||||||||||||||||||||||||||||||||||||    
T  13618373 aaaaatacccctgggcccatttaagtcatgacaaatc 13618337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 13618656 - 13618539
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||| ||||||||  ||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||  ||       ||||||||||    
T  13618656 ttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaaatcagaaatcaatcccagcaaaaaaatctgtctttt 13618557  T
Q  276 aaaaatacccctgggccc 293  Q
    ||||||||||||||||||    
T  13618556 aaaaatacccctgggccc 13618539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 52331405 - 52331480
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||| |||||||||||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||    
T  52331405 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaa 52331480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 7709703 - 7709773
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||||||||| ||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||    
T  7709703 ttaaatattgaactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaa 7709773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 13618254 - 13618322
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaa 240  Q
    |||| ||||||||||||||| |||||  |||||||| ||||||||||||| |||| ||||||| |||||    
T  13618254 aaggcttaaatattgcactcttccctgcaaatatgacccgtttaagttttagtccctgtaaaaaaaaaa 13618322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 34492240 - 34492302
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaa 239  Q
    |||||||||||||||||||||  |||||||  ||||||||||||| |||| ||||||| ||||    
T  34492240 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtccgtgtaaaaaaaaa 34492302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 172 - 325
Target Start/End: Complemental strand, 12414214 - 12414060
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgt 270  Q
    |||| |||||||||||||||||||||  ||||||| ||||||||||||||  |||||||||||||||||||||||| ||||||| |||       |||||    
T  12414214 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 12414115  T
Q  271 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  12414114 cttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgccta 12414060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 172 - 325
Target Start/End: Complemental strand, 12426274 - 12426120
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgt 270  Q
    |||| |||||||||||||||||||||  ||||||| ||||||||||||||  |||||||||||||||||||||||| ||||||| |||       |||||    
T  12426274 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 12426175  T
Q  271 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  12426174 cttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgccta 12426120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 172 - 321
Target Start/End: Complemental strand, 4732060 - 4731910
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgt 270  Q
    |||| ||||||||||||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       | |||    
T  4732060 aaggcttaaatattgcactcatccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatgt 4731961  T
Q  271 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatg 321  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  4731960 cttttaaaaatatccctgggcccatttaagtcatgacaagtcaccaaaatg 4731910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 4731718 - 4731788
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||||||||||||||||||||  |||||||  ||||||||| |||||||||||||||||||||||||||||    
T  4731718 ttaaatattgcactcgtccctgcaaatatggcccgtttaagatttggtccttgtaaaataaaaattcagaa 4731788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 7493 - 7642
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  |||||||  |||||||||||||||||||| |||||||||||||||||| ||| ||| |||       ||||||||||    
T  7493 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatcaatccccgcaaaaaaatctgtctttt 7592  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7593 aaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 7642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 7847 - 7777
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||||||||||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||    
T  7847 ttaaatattgcactcgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaa 7777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 16766292 - 16766441
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  |||||||| || |||||||||||||| ||||||||||||||||||| ||||||||| |||       ||||||||||    
T  16766292 ttaaatattgcactcgtccctgcaaatatgacccatttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtctttt 16766391  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  16766392 aaaaatacccttgggcccatttaagtcatggcaagtcaccaaaatgccta 16766441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 162 - 325
Target Start/End: Original strand, 33746700 - 33746864
Alignment:
Q  162 taatattttgaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnn 260  Q
    ||||| ||| |||| |||||||||||||||||||||  |||||||  ||||||||||||| |||| |||||||||||||||||||| ||| |||  ||      
T  33746700 taataatttcaaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtccatgtaaaataaaaattcagaaatcaatccctgcaa 33746799  T
Q  261 nnnnntctgtcttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
         |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33746800 aaaaatctgtcttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 33746864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 16368972 - 16368823
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||   |       | ||||||||    
T  16368972 ttaaatattgcactcgtccctgcaaatatgatccgtttaagttttggtccgtgtaaaatgaaaattcagaaatcagtccctacaaaaaaatttgtctttt 16368873  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  16368872 aaaaatacccctgggcccatttaaatcatgacaagtcaccaaaatgccta 16368823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 322
Target Start/End: Original strand, 6851252 - 6851398
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | | |        |||||||||    
T  6851252 ttaaatattgcactcgtccatgcaaatatgatccgtttaagttttggtctttgtaaaataaaaattcagaaatcagttcccacaaaaaaaactgtctttt 6851351  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgc 322  Q
    ||||||||||||||  |||||||||||||||||| ||||||||||||    
T  6851352 aaaaatacccctggatccatttaagtcatgacaagtcaccaaaatgc 6851398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 171 - 325
Target Start/End: Original strand, 11242289 - 11242444
Alignment:
Q  171 gaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctg 269  Q
    ||||| |||||||||||||||||||| |||||||||   | ||||||||||| |||||||||||||||||||||| ||||||||| |||       ||||    
T  11242289 gaaggcttaaatattgcactcgtccccataaatatggctcatttaagttttgatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctg 11242388  T
Q  270 tcttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||||||| | ||| ||||||||||||||||||  | |||||||||||||    
T  11242389 tcttttaaaaatactcatggacccatttaagtcatgacaggtgaccaaaatgccta 11242444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 199 - 325
Target Start/End: Complemental strand, 20582958 - 20582831
Alignment:
Q  199 taaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtcttttaaaaatacccctgggcccattt 297  Q
    ||||||||  |||||||||||||||||||||||||||||||||| |||| |||| || |||       ||||||||||||||||| ||||||||||||||    
T  20582958 taaatatggcccgtttaagttttggtccttgtaaaataaaaatttagaaatcagaccccgcaaaaaaatctgtcttttaaaaatatccctgggcccattt 20582859  T
Q  298 aagtcatgacaaatcaccaaaatgccta 325  Q
    |||||||||||| ||| |||||||||||    
T  20582858 aagtcatgacaagtcatcaaaatgccta 20582831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 20582639 - 20582709
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||    
T  20582639 ttaaatattgcactcgtccctacaaatatagtccgtttaagttttggtccttgtaaaataaaaattcagaa 20582709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 29847056 - 29846981
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||| |||||||||||||||||||||  |||||||  |||||||||||||||||  ||||||||||||||||||||    
T  29847056 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtctctgtaaaataaaaattcagaa 29846981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 16766632 - 16766562
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||||||||||| ||||||||  |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  16766632 ttaaatattgcaatcgtccctgcaaatatggcccgtttatgttttggtccttgtaaaataaaaattcagaa 16766562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 11246423 - 11246274
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattca-gaatcagtcctcgcnnnnnnntctgtctttt 275  Q
    ||||||||||||||| |||||  |||||||||| ||||||||||  ||||||||||||||||||||||  ||||||||| | |       | ||||||||    
T  11246423 ttaaatattgcactcatccctgcaaatatgatctgtttaagtttgagtccttgtaaaataaaaattcacaaatcagtccccacaaaaaaatttgtctttt 11246324  T
Q  276 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 325  Q
    | |||||||||| |  | ||||||||||||| |  | |||||||||||||    
T  11246323 ataaatacccctagatctatttaagtcatgaaaggttaccaaaatgccta 11246274  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 33747023 - 33746961
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaa 239  Q
    ||||||||||||| |||||||  |||||||  ||||||||||||| |||||||||||| ||||    
T  33747023 ttaaatattgcacccgtccctgcaaatatggcccgtttaagttttcgtccttgtaaaaaaaaa 33746961  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 16368639 - 16368707
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaa 240  Q
    |||| |||||||||||||||||||||  |||||||    ||||||||||| |||| ||||||| |||||    
T  16368639 aaggcttaaatattgcactcgtccctgcaaatatggcatgtttaagttttcgtccctgtaaaaaaaaaa 16368707  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 29846787 - 29846855
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaa 240  Q
    |||| |||||||||||||||||||||  |||||||   | |||||||||| |||| ||||||| |||||    
T  29846787 aaggcttaaatattgcactcgtccctgcaaatatgggtcatttaagttttcgtccctgtaaaaaaaaaa 29846855  T

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Target: scaffold0184 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 317
Target Start/End: Complemental strand, 7325 - 7183
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtc-ttt 274  Q
    |||||||||| | ||||||||  |||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| |||       |||||| |||    
T  7325 ttaaatattggattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtctttt 7226  T
Q  275 taaaaatacccctgggcccatttaagtcatgacaaatcaccaa 317  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  7225 taaaaatacccctgggcccatttaagtcatgacaagtcaccaa 7183  T

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Target: scaffold0184; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 7016 - 7091
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    |||| ||||||||||||||||| |||  ||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  7016 aaggcttaaatattgcactcgttcctgcaaatatggtccgtttaagttttggtccttataaaataaaaattcagaa 7091  T

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Target: scaffold0032 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 213 - 327
Target Start/End: Original strand, 32959 - 33076
Alignment:
Q  213 ttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnn--tctgtcttttaaaaatacccctgggcccatttaagtcatgacaa 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||         |||||||||||||||||||||||| ||||| |||||||||||||    
T  32959 ttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaaaatctgtcttttaaaaatacccctggacccatataagtcatgacaa 33058  T
Q  310 atcaccaaaatgcctatg 327  Q
     |||||||||||||||||    
T  33059 gtcaccaaaatgcctatg 33076  T

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Target: scaffold0032; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 33293 - 33218
Alignment:
Q  172 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 247  Q
    ||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  33293 aaggtttaaatattgcactcgtccctgcaaatatggtccgtttatgttttggtccttgtaaaataaaaattcagaa 33218  T

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Target: scaffold1408 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 1747 - 1859
Alignment:
Q  177 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 275  Q
    |||||||||||||||||||||  |||||||  |||||||||||||||||||| |||||||||||||||| ||||| ||| |||       ||||||||||    
T  1747 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatcaatccccgcaaaaaaatctgtctttt 1846  T
Q  276 aaaaatacccctg 288  Q
    |||||||||||||    
T  1847 aaaaatacccctg 1859  T

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