View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14728_low_29 (Length: 315)

Name: NF14728_low_29
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14728_low_29
NF14728_low_29
[»] chr5 (7 HSPs)
chr5 (1-132)||(35855790-35855921)
chr5 (129-214)||(35855660-35855745)
chr5 (205-261)||(2313857-2313913)
chr5 (187-261)||(2312965-2313040)
chr5 (152-275)||(20847745-20847868)
chr5 (184-261)||(20848579-20848656)
chr5 (205-261)||(3969304-3969360)
[»] chr6 (3 HSPs)
chr6 (141-274)||(27786516-27786649)
chr6 (163-261)||(29299048-29299147)
chr6 (141-231)||(27785903-27785993)
[»] chr3 (3 HSPs)
chr3 (205-261)||(24162324-24162380)
chr3 (205-261)||(24163677-24163733)
chr3 (205-261)||(33218905-33218961)
[»] chr7 (3 HSPs)
chr7 (205-261)||(37035712-37035768)
chr7 (187-261)||(37034820-37034895)
chr7 (186-260)||(39323794-39323869)
[»] chr4 (4 HSPs)
chr4 (205-261)||(26342355-26342411)
chr4 (142-272)||(22405637-22405767)
chr4 (205-261)||(33959669-33959725)
chr4 (187-261)||(26341463-26341538)
[»] chr2 (4 HSPs)
chr2 (205-261)||(35113740-35113796)
chr2 (187-261)||(35112848-35112923)
chr2 (161-221)||(27006930-27006990)
chr2 (209-261)||(41432811-41432863)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 35855921 - 35855790
Alignment:
Q  1 tcaaaggttatcaaattatcataaactcatactcatgtaatgttttaccaaatcatcataaattcctactcatgaaatgaaactatttgtttaaatatat 100  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35855921 tcaaaagttatcaaatcatcataaactcatactcatgtaatgttttaccaaatcatcataaattcctactcatgaaatgaaaatatttgtttaaatatat 35855822  T
Q  101 tgattttggttaaattgattttgtaaaattaa 132  Q
    |||||||| |||||||||||||||||||||||    
T  35855821 tgattttgattaaattgattttgtaaaattaa 35855790  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 35855745 - 35855660
Alignment:
Q  129 ttaaatatatttaggtgatagagtgtggaaaaacacatgtgttgattaaaatagaacttttaatctcaaacatatattttaatcta 214  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35855745 ttaaatatatttaggtgatagagtgcggaaaaacacatgtgttgattaaaatagaacttttaatctcaaacatatattttaatcta 35855660  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 2313857 - 2313913
Alignment:
Q  205 ttttaatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    |||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||    
T  2313857 ttttaatctaatgactgataaaacattctcacattcttacataacaaactcattctc 2313913  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 2313040 - 2312965
Alignment:
Q  187 tttaatctcaaacatatatttt-aatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    ||||||||||| ||| |||||| |||||||||  ||||||| |||| ||| |||||||||||||||||||||||||    
T  2313040 tttaatctcaaccatctatttttaatctaatggctgataaaacattctcatattctcacataacaaactcattctc 2312965  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 275
Target Start/End: Complemental strand, 20847868 - 20847745
Alignment:
Q  152 tgtggaaaaacacatgtgttgattaaaatagaacttttaatctcaaacatatattttaatctaatgattgataaagcattatcacattctcacataacaa 251  Q
    |||||||| ||| ||||||| |||||||| ||  |||||||||  | ||| ||||  ||||||||| |||||||| |||| ||||||||| || ||||||    
T  20847868 tgtggaaagacatatgtgttaattaaaattgagtttttaatcttgaccatttattacaatctaatggttgataaatcattctcacattcttacgtaacaa 20847769  T
Q  252 actcattctcgctatagatatatg 275  Q
    ||||| ||||  |||| |||||||    
T  20847768 actcagtctcaatatatatatatg 20847745  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 20848579 - 20848656
Alignment:
Q  184 acttttaatctcaaacatatattttaatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    |||||| |||| ||| || |||||| |||||||| |||||||| |||| ||||||||| ||||||||||| |||||||    
T  20848579 acttttgatctgaaaaatctattttgatctaatggttgataaatcattctcacattcttacataacaaacacattctc 20848656  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 3969304 - 3969360
Alignment:
Q  205 ttttaatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    |||||||||||||  ||||||| |||| ||| ||||||||||||||||| |||||||    
T  3969304 ttttaatctaatggctgataaatcattctcatattctcacataacaaacccattctc 3969360  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 141 - 274
Target Start/End: Original strand, 27786516 - 27786649
Alignment:
Q  141 aggtgatagagtgtggaaaaacacatgtgttgattaaaatagaacttttaatctcaaacatatattttaatctaatgattgataaagcattatcacattc 240  Q
    ||||||||||||||||||| ||||||||  |||||||||| |||||||||||||||| ||| ||||||||||||||| |||||| |||||| ||| ||||    
T  27786516 aggtgatagagtgtggaaagacacatgtaatgattaaaattgaacttttaatctcaaccatgtattttaatctaatggttgatagagcattctcatattc 27786615  T
Q  241 tcacataacaaactcattctcgctatagatatat 274  Q
    ||| ||||||||||||||||| ||||| ||||||    
T  27786616 tcatataacaaactcattctcactatatatatat 27786649  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 29299147 - 29299048
Alignment:
Q  163 acatgtgttgattaaaatagaacttttaatctcaaacatatatttta-atctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    |||||||||| ||||||| ||||||||||||| || ||||||||||  |||||||| ||||||||  ||| ||| |||||||||||||||||||||||||    
T  29299147 acatgtgttggttaaaatggaacttttaatctgaatcatatatttttgatctaatggttgataaactattctcatattctcacataacaaactcattctc 29299048  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 27785993 - 27785903
Alignment:
Q  141 aggtgatagagtgtggaaaaacacatgtgttgattaaaatagaacttttaatctcaaacatatattttaatctaatgattgataaagcatt 231  Q
    ||||||||||||||||||| ||||||||  ||||||||||   |||||||||||||| ||| ||||||||||||||| |||| ||||||||    
T  27785993 aggtgatagagtgtggaaagacacatgtaatgattaaaattagacttttaatctcaatcatgtattttaatctaatggttgacaaagcatt 27785903  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 24162380 - 24162324
Alignment:
Q  205 ttttaatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||    
T  24162380 ttttaatctaatggttgataaaccattctcacattctcacataacaaactcattctc 24162324  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 24163677 - 24163733
Alignment:
Q  205 ttttaatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||    
T  24163677 ttttaatctaatggttgataaaccattctcacattctcacataacaaactcattctc 24163733  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 33218905 - 33218961
Alignment:
Q  205 ttttaatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    ||||||| ||||| |||||||| |||| ||| |||||||||||||||||||||||||    
T  33218905 ttttaatttaatggttgataaatcattctcatattctcacataacaaactcattctc 33218961  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 37035712 - 37035768
Alignment:
Q  205 ttttaatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    |||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||    
T  37035712 ttttaatctaatgactgataaaacattctcacattcttacataacaaactcattctc 37035768  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 37034895 - 37034820
Alignment:
Q  187 tttaatctcaaacatatatttt-aatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    ||||||||||| ||| |||||| |||||||||  ||||||| |||| ||| |||||||||||| ||||||||||||    
T  37034895 tttaatctcaaccatctatttttaatctaatggctgataaaacattctcatattctcacataagaaactcattctc 37034820  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 39323794 - 39323869
Alignment:
Q  186 ttttaatctcaaacatatatttt-aatctaatgattgataaagcattatcacattctcacataacaaactcattct 260  Q
    |||||||||||  |||||||||| ||||||||   ||||||| |||| ||| |||||||||||||||| |||||||    
T  39323794 ttttaatctcagccatatatttttaatctaatagctgataaatcattctcatattctcacataacaaattcattct 39323869  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 26342355 - 26342411
Alignment:
Q  205 ttttaatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    |||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||    
T  26342355 ttttaatctaatgactgataaaacattctcacattcttacataacaaactcattctc 26342411  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 272
Target Start/End: Original strand, 22405637 - 22405767
Alignment:
Q  142 ggtgatagagtgtggaaaaacacatgtgttgattaaaatagaacttttaatctcaaacatatattttaatctaatgattgataaagcattatcacattct 241  Q
    |||||| ||||||| ||| | |||||||||  ||| | ||||| |||||||||  | |||  ||||||||| ||   |||||||| |||| |||||||||    
T  22405637 ggtgattgagtgtgaaaagatacatgtgttatttagattagaaattttaatcttgaccattcattttaatcgaagagttgataaatcattctcacattct 22405736  T
Q  242 cacataacaaactcattctcgctatagatat 272  Q
    || ||||||||||||||||| ||||| ||||    
T  22405737 catataacaaactcattctcactatatatat 22405767  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 33959725 - 33959669
Alignment:
Q  205 ttttaatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    |||||||||||||| ||||||| |||| ||| |||||||||||||||| ||||||||    
T  33959725 ttttaatctaatgactgataaatcattctcatattctcacataacaaattcattctc 33959669  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 26341538 - 26341463
Alignment:
Q  187 tttaatctcaaacatatatttt-aatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    ||||||||||| ||| |||||| |||||||||  ||||||| |||| ||| |||||||||||| ||||||||||||    
T  26341538 tttaatctcaaccatctatttttaatctaatggctgataaaacattctcatattctcacataagaaactcattctc 26341463  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 35113740 - 35113796
Alignment:
Q  205 ttttaatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    |||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||    
T  35113740 ttttaatctaatgactgataaaacattctcacattcttacataacaaactcattctc 35113796  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 35112923 - 35112848
Alignment:
Q  187 tttaatctcaaacatatatttt-aatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    ||||||||||| ||| |||||| |||||||||  ||||||| |||| ||| |||||||||||||||||||||||||    
T  35112923 tttaatctcaaccatctatttttaatctaatggctgataaaacattctcatattctcacataacaaactcattctc 35112848  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 27006930 - 27006990
Alignment:
Q  161 acacatgtgttgattaaaatagaacttttaatctcaaacatatattttaatctaatgattg 221  Q
    |||||||| ||| |||||||||| ||||||||||||  |||| ||||||||||||||||||    
T  27006930 acacatgttttgtttaaaatagatcttttaatctcagccatacattttaatctaatgattg 27006990  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 261
Target Start/End: Original strand, 41432811 - 41432863
Alignment:
Q  209 aatctaatgattgataaagcattatcacattctcacataacaaactcattctc 261  Q
    |||||||||  ||||||| |||| ||| |||||||||||||||||||||||||    
T  41432811 aatctaatggctgataaatcattctcatattctcacataacaaactcattctc 41432863  T

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