View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_34 (Length: 295)
Name: NF14728_low_34
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 41561295 - 41561036
Alignment:
| Q |
16 |
aaaaagttcttcaacaaaaatttagcattttgtaacatgagatggattcaatgtaaactttccacaatgacaaaggttgaagatnnnnnnntcgtagatc |
115 |
Q |
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| T |
41561295 |
aaaaagttcttcaacaaaaatttagcattttgtaacatgagatggattcaatgtaaactttccacaatgacaaaggttgaagataaaaaattcgtagatc |
41561196 |
T |
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| Q |
116 |
taaatattaaattttgagtttaattatttgtggaagaatttttctaatgttttcaacatatctnnnnnnncattcaaatgtattcatttaactacaaaga |
215 |
Q |
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| T |
41561195 |
taaatatt-aattttgagtttaattatttgtggaagaatttttctaatgttttcaacatatctaaaaaaacattgaaatgtattcatttaacaacaaaga |
41561097 |
T |
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| Q |
216 |
ttaaaattgttttcaggattattgtattgactaaagaatgcttagcttttttcagatagaa |
276 |
Q |
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| T |
41561096 |
ttaaaattgttttcaggattattgtattgactaaagaatgcttagcttttttcagatagaa |
41561036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 3157770 - 3157826
Alignment:
| Q |
116 |
taaatattaaattttgagtttaattatttgtggaagaatttttctaatgttttcaaca |
173 |
Q |
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| T |
3157770 |
taaaaattaaattttgagtt-aattttttgtggaagaacttttataatgttttaaaca |
3157826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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