View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_35 (Length: 294)
Name: NF14728_low_35
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 38319138 - 38319412
Alignment:
| Q |
1 |
gctttgattctttttggtgtgaggaatgtgtgttgttttcatcaatnnnnnnnnnnnnn----gtacaattttaattagccactaaattatgaattgaag |
96 |
Q |
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| T |
38319138 |
gctttgattctttttggtgtgaggaatgtgtgttgttttcatcaataaaaaataaaataaaaagtacaattttaattagccactaaattatgaattgaag |
38319237 |
T |
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| Q |
97 |
gttaggtattatatatccaaagtatggagtaggttattatcacttaaaaaatggacgattttatagattaatgacatgtttgaaatgacaataaaatcat |
196 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38319238 |
gttaggtat---atatccaaagtatggagtaggttattatcacttaaaaaatggtcgattttatagattaatgacatgtttgaaatgacaataaaatcat |
38319334 |
T |
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| Q |
197 |
gttaaaccactacgattttggcataagctacattttaaagtttcgattaatcgaaccctgcataacttcttggtcttg |
274 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
38319335 |
gttaaaccactacgattttggcataagctacattatgaagtttctattaatcgaacgctgcataacttcttggtcttg |
38319412 |
T |
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