View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14728_low_36 (Length: 292)

Name: NF14728_low_36
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14728_low_36
NF14728_low_36
[»] chr1 (25 HSPs)
chr1 (17-292)||(16050316-16050591)
chr1 (13-260)||(34273041-34273287)
chr1 (78-245)||(26977709-26977876)
chr1 (93-251)||(16030358-16030516)
chr1 (79-236)||(12177364-12177521)
chr1 (77-245)||(33101461-33101629)
chr1 (14-211)||(5671773-5671970)
chr1 (113-251)||(22414738-22414876)
chr1 (113-257)||(52565537-52565681)
chr1 (28-247)||(2140853-2141068)
chr1 (86-292)||(4601450-4601656)
chr1 (116-256)||(5459702-5459841)
chr1 (156-248)||(14255063-14255155)
chr1 (18-246)||(23728716-23728942)
chr1 (94-257)||(8018906-8019068)
chr1 (136-244)||(25408066-25408174)
chr1 (97-251)||(2612638-2612791)
chr1 (99-256)||(18246101-18246257)
chr1 (169-256)||(48637508-48637596)
chr1 (129-256)||(43344450-43344575)
chr1 (136-208)||(1659802-1659874)
chr1 (91-171)||(12032221-12032300)
chr1 (113-224)||(23280252-23280361)
chr1 (179-216)||(30732515-30732552)
chr1 (140-248)||(16299591-16299698)
[»] chr6 (37 HSPs)
chr6 (15-246)||(18147274-18147505)
chr6 (28-257)||(30680949-30681178)
chr6 (14-244)||(19305434-19305664)
chr6 (15-243)||(11087473-11087701)
chr6 (12-234)||(33596841-33597063)
chr6 (27-222)||(15480245-15480440)
chr6 (79-242)||(20148289-20148450)
chr6 (79-242)||(22184378-22184539)
chr6 (12-214)||(689747-689948)
chr6 (86-248)||(19730554-19730715)
chr6 (36-211)||(17380100-17380275)
chr6 (16-263)||(22571996-22572242)
chr6 (92-215)||(34572963-34573086)
chr6 (115-242)||(9277293-9277419)
chr6 (86-213)||(9403173-9403300)
chr6 (115-250)||(34187263-34187397)
chr6 (93-251)||(9291990-9292147)
chr6 (136-251)||(16343542-16343657)
chr6 (16-174)||(31423731-31423888)
chr6 (138-242)||(19331695-19331799)
chr6 (94-242)||(31295506-31295654)
chr6 (116-187)||(3404855-3404926)
chr6 (88-189)||(16130993-16131094)
chr6 (50-215)||(27860875-27861040)
chr6 (86-245)||(12449546-12449705)
chr6 (137-248)||(22497312-22497423)
chr6 (90-205)||(14268440-14268556)
chr6 (86-178)||(19277039-19277131)
chr6 (146-210)||(25008413-25008477)
chr6 (92-244)||(34064165-34064317)
chr6 (113-212)||(4251034-4251133)
chr6 (130-224)||(14080474-14080567)
chr6 (91-224)||(12424282-12424415)
chr6 (97-196)||(10115659-10115758)
chr6 (184-241)||(30654564-30654621)
chr6 (116-168)||(12203631-12203683)
chr6 (92-178)||(18566693-18566779)
[»] chr4 (17 HSPs)
chr4 (6-214)||(2674457-2674661)
chr4 (12-249)||(47253242-47253479)
chr4 (12-246)||(12683753-12683987)
chr4 (91-256)||(19809660-19809824)
chr4 (51-246)||(15742081-15742276)
chr4 (12-234)||(29157082-29157304)
chr4 (95-240)||(15514533-15514678)
chr4 (12-257)||(19643659-19643903)
chr4 (78-249)||(5518505-5518676)
chr4 (129-245)||(10981835-10981950)
chr4 (50-220)||(16012399-16012568)
chr4 (117-256)||(19818652-19818790)
chr4 (137-215)||(14602029-14602107)
chr4 (159-224)||(13171069-13171134)
chr4 (135-243)||(14003076-14003184)
chr4 (160-245)||(3981919-3982002)
chr4 (94-142)||(50151775-50151823)
[»] chr7 (21 HSPs)
chr7 (13-234)||(26762801-26763022)
chr7 (11-261)||(5863140-5863390)
chr7 (33-245)||(39879356-39879569)
chr7 (52-256)||(29373404-29373608)
chr7 (11-248)||(13292012-13292248)
chr7 (97-241)||(9135335-9135479)
chr7 (129-245)||(21161211-21161326)
chr7 (121-248)||(9867937-9868064)
chr7 (15-210)||(43171928-43172114)
chr7 (86-246)||(12644753-12644914)
chr7 (126-234)||(7486525-7486633)
chr7 (50-244)||(16987019-16987213)
chr7 (91-223)||(10287564-10287696)
chr7 (16-168)||(16203768-16203920)
chr7 (96-216)||(9573400-9573519)
chr7 (91-233)||(5925443-5925585)
chr7 (14-165)||(16204340-16204491)
chr7 (167-224)||(1979052-1979109)
chr7 (184-256)||(2226601-2226673)
chr7 (136-212)||(5929024-5929100)
chr7 (136-214)||(34854243-34854321)
[»] chr2 (22 HSPs)
chr2 (16-243)||(3586334-3586561)
chr2 (14-259)||(12127554-12127799)
chr2 (78-249)||(12168937-12169109)
chr2 (13-257)||(19918956-19919200)
chr2 (12-246)||(36267466-36267700)
chr2 (96-254)||(45258125-45258283)
chr2 (98-249)||(45714960-45715111)
chr2 (17-224)||(24499779-24499983)
chr2 (116-257)||(27846512-27846653)
chr2 (85-248)||(29710984-29711145)
chr2 (16-251)||(10923059-10923293)
chr2 (93-248)||(18135837-18135992)
chr2 (96-239)||(20120322-20120465)
chr2 (86-215)||(15825153-15825282)
chr2 (115-209)||(24755473-24755567)
chr2 (91-247)||(15390553-15390709)
chr2 (136-211)||(18770317-18770392)
chr2 (94-193)||(23257803-23257901)
chr2 (50-247)||(19050362-19050559)
chr2 (156-246)||(29137869-29137959)
chr2 (94-250)||(17671937-17672091)
chr2 (51-166)||(18772296-18772411)
[»] scaffold0360 (1 HSPs)
scaffold0360 (19-209)||(13927-14117)
[»] chr3 (21 HSPs)
chr3 (15-241)||(9800977-9801201)
chr3 (17-211)||(17143643-17143837)
chr3 (33-211)||(30606931-30607109)
chr3 (34-211)||(16704405-16704582)
chr3 (15-257)||(28723665-28723908)
chr3 (92-243)||(431285-431436)
chr3 (91-257)||(2311802-2311968)
chr3 (35-267)||(8122824-8123058)
chr3 (12-178)||(28715376-28715543)
chr3 (31-243)||(1770796-1771008)
chr3 (96-241)||(21342260-21342405)
chr3 (156-251)||(21649376-21649471)
chr3 (91-253)||(14860067-14860229)
chr3 (96-224)||(12516175-12516303)
chr3 (98-248)||(12731536-12731686)
chr3 (123-253)||(13085073-13085203)
chr3 (113-243)||(17485614-17485744)
chr3 (98-273)||(20622347-20622524)
chr3 (113-180)||(7835564-7835631)
chr3 (182-224)||(9007835-9007877)
chr3 (158-246)||(12108387-12108475)
[»] scaffold0023 (1 HSPs)
scaffold0023 (18-223)||(95705-95910)
[»] chr8 (24 HSPs)
chr8 (39-250)||(26916814-26917025)
chr8 (16-255)||(30477600-30477839)
chr8 (15-216)||(5859813-5860014)
chr8 (33-261)||(18322896-18323124)
chr8 (116-244)||(24507427-24507555)
chr8 (50-224)||(13754748-13754921)
chr8 (92-244)||(3459453-3459604)
chr8 (100-255)||(17927681-17927836)
chr8 (28-248)||(21416704-21416924)
chr8 (15-195)||(6927986-6928162)
chr8 (33-188)||(17698195-17698350)
chr8 (78-251)||(15057998-15058171)
chr8 (149-256)||(23269204-23269311)
chr8 (135-255)||(13764948-13765068)
chr8 (121-199)||(24070867-24070946)
chr8 (95-224)||(24576555-24576684)
chr8 (93-154)||(23497133-23497194)
chr8 (51-178)||(11776171-11776298)
chr8 (190-257)||(20055536-20055603)
chr8 (189-256)||(23497201-23497268)
chr8 (157-242)||(1909742-1909827)
chr8 (149-178)||(7220557-7220586)
chr8 (167-223)||(14666883-14666939)
chr8 (167-251)||(24677631-24677715)
[»] scaffold0505 (1 HSPs)
scaffold0505 (18-251)||(7848-8081)
[»] chr5 (15 HSPs)
chr5 (28-208)||(26994511-26994691)
chr5 (16-250)||(27083132-27083364)
chr5 (98-251)||(22903056-22903209)
chr5 (12-216)||(32418375-32418579)
chr5 (86-248)||(25537371-25537533)
chr5 (87-239)||(25333710-25333862)
chr5 (97-256)||(8938868-8939028)
chr5 (50-244)||(20025253-20025446)
chr5 (11-240)||(22865735-22865963)
chr5 (91-199)||(24647303-24647411)
chr5 (182-257)||(4477155-4477230)
chr5 (140-243)||(19993182-19993285)
chr5 (171-234)||(26348127-26348190)
chr5 (158-249)||(16621173-16621264)
chr5 (117-160)||(34493567-34493610)
[»] scaffold0054 (1 HSPs)
scaffold0054 (79-214)||(68758-68891)
[»] scaffold0002 (2 HSPs)
scaffold0002 (50-273)||(120938-121161)
scaffold0002 (51-246)||(379684-379879)
[»] scaffold0291 (2 HSPs)
scaffold0291 (96-208)||(15403-15515)
scaffold0291 (28-209)||(8486-8663)
[»] scaffold0140 (1 HSPs)
scaffold0140 (93-214)||(6298-6419)
[»] scaffold0103 (1 HSPs)
scaffold0103 (94-214)||(40796-40916)
[»] scaffold0205 (2 HSPs)
scaffold0205 (87-214)||(10879-11006)
scaffold0205 (86-248)||(22852-23014)
[»] scaffold0294 (1 HSPs)
scaffold0294 (86-206)||(205-326)
[»] scaffold0022 (1 HSPs)
scaffold0022 (94-223)||(69197-69324)
[»] scaffold0174 (2 HSPs)
scaffold0174 (135-245)||(29290-29398)
scaffold0174 (81-133)||(24815-24867)
[»] scaffold0074 (1 HSPs)
scaffold0074 (140-214)||(35253-35327)
[»] scaffold0005 (1 HSPs)
scaffold0005 (137-215)||(215271-215349)
[»] scaffold0013 (1 HSPs)
scaffold0013 (95-224)||(4396-4525)
[»] scaffold0380 (1 HSPs)
scaffold0380 (50-246)||(6787-6983)
[»] scaffold0263 (1 HSPs)
scaffold0263 (136-244)||(20510-20618)
[»] scaffold0101 (1 HSPs)
scaffold0101 (161-245)||(10756-10840)
[»] scaffold0057 (1 HSPs)
scaffold0057 (78-212)||(73757-73891)
[»] scaffold0034 (1 HSPs)
scaffold0034 (96-257)||(18444-18604)
[»] scaffold0464 (1 HSPs)
scaffold0464 (136-205)||(11525-11591)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 16050591 - 16050316
Alignment:
Q  17 gaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgc 116  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||   ||||||||||||||| |||||||||||||||||||||    
T  16050591 gaggatcaccctacacgtgtcctctaactgtctttaatcacacaccgcaaaatccggaatgatttattcccaatgcgcacctatataagggtggcattgc 16050492  T
Q  117 ttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcagg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  16050491 ttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtgctaacgtgcctgcaga 16050392  T
Q  217 tacctttctatccaccgcgaagactcatcgccaccataccgaaaatcattgtcgtcatacgagagcatcttctgcc 292  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||||||||    
T  16050391 tacctttctatccaccgcgaagactcatcgccactataccggaaaccattgtcgtcataccagagcatcttctgcc 16050316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 34273287 - 34273041
Alignment:
Q  13 gcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggca 112  Q
    |||||||||||   |||||| ||||||||||| ||  |||| | |||||||||||| | |||   |||||||||||| || | |||||||||||| | ||    
T  34273287 gcgcgaggatcatgctacacatgtcctctaaccgttcctaaccgcacgccgcaaaacctggaggcggttattcccaa-gcacacctatataagggcgaca 34273189  T
Q  113 ttgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctg 212  Q
    |||||||| ||||||||||||  ||||||| ||| ||||||||||||||||||||||||||||| | | |||||||||| ||||||| ||||||||| ||    
T  34273188 ttgcttcaccctcaaggtatgagtcactttacacaacactttctacacactctttctcagttccgttactgacttgagcattggagtgctaacgtgcttg 34273089  T
Q  213 caggtacctttctatccaccgcgaagactcatcgccaccataccgaaa 260  Q
    ||||||||||||   ||||||| ||||||| |||||||| ||||||||    
T  34273088 caggtacctttcgtcccaccgcaaagactcctcgccaccgtaccgaaa 34273041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 245
Target Start/End: Complemental strand, 26977876 - 26977709
Alignment:
Q  78 ggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttcca 177  Q
    |||||||||||  ||||||||||||||||||   ||||||||| |||||||||||| |||| ||||||| | ||||||||||||||||||||| ||||||    
T  26977876 ggttattcccatcgcgcgcctatataagggtcaaattgcttcaccctcaaggtatgattcatttttcacaatactttctacacactctttctcggttcca 26977777  T
Q  178 tcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatc 245  Q
    | | |||||||||||||||||| |||||||||||||||| |||||||  |||||||| |||| |||||    
T  26977776 ttactgacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagattcatc 26977709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 93 - 251
Target Start/End: Complemental strand, 16030516 - 16030358
Alignment:
Q  93 gcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcg 192  Q
    ||||||||||||||||||| | |||||  |||||||||||| |||||||||||| |||||||||||||||||||  |||||||||| | ||||||||||     
T  16030516 gcgcctatataagggtggcttagcttcgccctcaaggtatgattcacttttcacaacactttctacacactcttattcagttccattactgacttgagca 16030417  T
Q  193 ttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccacc 251  Q
    || || |  ||||||||||||||  |||||||  ||||||| |||||||||||||||||    
T  16030416 tttgactgataacgtgcctgcagacacctttcattccaccgtgaagactcatcgccacc 16030358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 12177521 - 12177364
Alignment:
Q  79 gttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccat 178  Q
    ||||| |||||||||| ||||||||||| ||   ||||||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||    
T  12177521 gttatgcccaatgcgcacctatataaggttgaacttgcttcctcctcaaggtataattcacttttcacaacactttctacacactctttctcagttccat 12177422  T
Q  179 caatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcga 236  Q
     | ||||||||| || ||||| ||||||||| || ||| |||||||  ||||||||||    
T  12177421 tactgacttgagtgtcggagtgctaacgtgcatgtaggcacctttcgttccaccgcga 12177364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 77 - 245
Target Start/End: Original strand, 33101461 - 33101629
Alignment:
Q  77 tggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttcc 176  Q
    ||||||| | ||| ||||| ||| |||| |||| ||||| |||| ||||||| || |||||||||||||| |||||||||||||||| ||||||||||||    
T  33101461 tggttatccacaacgcgcgtctacataaaggtgacattgtttcaccctcaagttacggttcacttttcacaacactttctacacactttttctcagttcc 33101560  T
Q  177 atcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatc 245  Q
    || |  ||||||||||||||||| |||||||||||||| | |||||||  || || |||||||||||||    
T  33101561 attaccgacttgagcgttggagtgctaacgtgcctgcatgcacctttcattctacagcgaagactcatc 33101629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 5671970 - 5671773
Alignment:
Q  14 cgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcat 113  Q
    |||||||||| ||||| || |||||||| || |   |||||||||||  ||||||   |||  ||||||||  ||||||||| ||||||||| ||| | |    
T  5671970 cgcgaggatcaccctatacatgtcctcttaccgctcctaatcacacgatgcaaaacttggacgtggttattttcaatgcgcgtctatataagagtgactt 5671871  T
Q  114 tgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
      ||||| | |||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||||    
T  5671870 aacttcaccttcaatgtatgattcacttttcacaacactttctacacactctttctcagttccattactaacttgagcgttggagtgctaacgtgcct 5671773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 113 - 251
Target Start/End: Complemental strand, 22414876 - 22414738
Alignment:
Q  113 ttgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctg 212  Q
    |||||||| ||||||| |||| |||||||||||| |||||||||||||||| ||| |||||| ||| | ||||||||||||  |||| ||||||||||||    
T  22414876 ttgcttcaccctcaagatatgattcacttttcacaacactttctacacactttttttcagtttcattactgacttgagcgtcagagtgctaacgtgcctg 22414777  T
Q  213 caggtacctttctatccaccgcgaagactcatcgccacc 251  Q
    | || |||||||  |||||||| ||||||||||| ||||    
T  22414776 cgggcacctttcgttccaccgcaaagactcatcgtcacc 22414738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 257
Target Start/End: Complemental strand, 52565681 - 52565537
Alignment:
Q  113 ttgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctg 212  Q
    |||||||| ||||||| |||| |||||||||||| ||||||||| | |||||||| |||||||| | | ||||||||||||  |||| |||||||| |||    
T  52565681 ttgcttcaccctcaagttatgattcacttttcacaacactttctgcgcactctttttcagttcctttactgacttgagcgtcagagtgctaacgtgtctg 52565582  T
Q  213 caggtacctttctatccaccgcgaagactcatcgccaccataccg 257  Q
    |||| |||||||  |||| | |||| |||||||||||||||||||    
T  52565581 caggcacctttcgttccatcacgaaaactcatcgccaccataccg 52565537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 2140853 - 2141068
Alignment:
Q  28 tacacgtgtcctctaactgtctc-taatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctca 126  Q
    ||||||||||||||||| || || ||||||||| || ||||| ||| || ||||||||| ||  ||||| || |||||||||| | | |||||| |||||    
T  2140853 tacacgtgtcctctaaccgtttcctaatcacacaccacaaaacccgaaagtggttattctcac-gcgcgtctttataagggtgacttagcttcaccctca 2140951  T
Q  127 aggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttcta 226  Q
    |||||||||||||||| ||| |||||||||||||| |||||     ||| || | |||||||||||||||||| ||||  ||||||||   |||||||      
T  2140952 aggtatggttcactttccacaacactttctacacattcttt----tttcaattactgacttgagcgttggagtgctaagttgcctgcatacacctttcgt 2141047  T
Q  227 tccaccgcgaagactcatcgc 247  Q
    || |||| ||||| |||||||    
T  2141048 tctaccgtgaagattcatcgc 2141068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 292
Target Start/End: Original strand, 4601450 - 4601656
Alignment:
Q  86 ccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgac 185  Q
    ||||||||||| ||||||||||||   |||||||| |||||||| |    |||  ||||||  |||||  |||||| | |||||||||| ||| | ||||    
T  4601450 ccaatgcgcgcgtatataagggtgaacttgcttcaccctcaagggacacatcaaatttcacagcacttattacacattatttctcagtttcattactgac 4601549  T
Q  186 ttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccataccgaaaatcattgtcgtcatacgagagcatc 285  Q
    |||||||| ||||| |||||||||||||||  |||||||  ||||||||||||||| |||||| |||| ||| |||  |||  ||||| || |||||||     
T  4601550 ttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccgcgaagacttatcgccgccatgccggaaacaattaccgtcacaccagagcatt 4601649  T
Q  286 ttctgcc 292  Q
    |||||||    
T  4601650 ttctgcc 4601656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 256
Target Start/End: Original strand, 5459702 - 5459841
Alignment:
Q  116 cttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcag 215  Q
    |||||||| ||| ||||| |||||||| ||| |||||||||||||||||||||||||| || | | ||  |||| ||||||||| ||||||| ||||||     
T  5459702 cttcatccccaatgtatgattcactttacacaacactttctacacactctttctcagt-ccgttactgttttgaacgttggagtgctaacgtacctgcat 5459800  T
Q  216 gtacctttctatccaccgcgaagactcatcgccaccatacc 256  Q
    | |||||||   ||||| |||||||||||||||||| ||||    
T  5459801 gcacctttcgtcccaccacgaagactcatcgccaccgtacc 5459841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 14255063 - 14255155
Alignment:
Q  156 tacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcc 248  Q
    ||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||| |||||| ||| |||  |||||| |||||||||||||||    
T  14255063 tacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaagactcatcgcc 14255155  T

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Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 23728716 - 23728942
Alignment:
Q  18 aggatccccctacacgtgtcct-ctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgc 116  Q
    |||||| ||||||||||||||| ||  ||||| ||||||||| |||||| |||  | |   ||||||  |||| | |||||||||||||||||   |||     
T  23728716 aggatcaccctacacgtgtcctgct--ctgtccctaatcacatgccgcataatttgaagacggttatggccaacgtgcgcctatataagggtgaacttgt 23728813  T
Q  117 ttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcagg 216  Q
    |||| ||||||||||    ||||||||||| ||||||  |||||||||||||||| |||||| ||||||||||||||   | | ||||||||||||||      
T  23728814 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcatttccattaatgacttgagcgtcataatgctaacgtgcctgcatc 23728913  T
Q  217 tacctttctatccaccgcgaagactcatcg 246  Q
     |||||||  | ||||||||||||||||||    
T  23728914 cacctttc-gttcaccgcgaagactcatcg 23728942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 257
Target Start/End: Complemental strand, 8019068 - 8018906
Alignment:
Q  94 cgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgt 193  Q
    |||||||||||||||| ||| |||||| || ||||||||| |||||||||| ||  ||||| | |||| ||  ||||| ||||   | ||||||||||||    
T  8019068 cgcctatataagggtgacatagcttcacccccaaggtatgattcacttttcccct-actttttgcacattccatctcatttcccatactgacttgagcgt 8018970  T
Q  194 tggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccataccg 257  Q
     | ||| |||||||||||| || ||||||||   ||||| |||||||||||||||||| |||||    
T  8018969 cgtagtgctaacgtgcctgtagatacctttcgtcccaccacgaagactcatcgccaccgtaccg 8018906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 25408174 - 25408066
Alignment:
Q  136 tcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcg 235  Q
    ||||||||||| ||||||  |||||||||| | |||||| ||| | |||||||||| ||||||| |||||||| ||||||| |||||||  ||||||||     
T  25408174 tcacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcattggagtgctaacgtgtctgcaggcacctttcattccaccgca 25408075  T
Q  236 aagactcat 244  Q
     ||||||||    
T  25408074 gagactcat 25408066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 2612638 - 2612791
Alignment:
Q  97 ctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttgg 196  Q
    |||||||||||||   | ||||||||||||||||||| |||| ||||  || || ||| ||||||||||| ||||||||||  | |||||||||||||      
T  2612638 ctatataagggtgagttagcttcatcctcaaggtatgattcatttttt-ccgcattttttacacactcttcctcagttccaatactgacttgagcgtttc 2612736  T
Q  197 agtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccacc 251  Q
    | |||||||||| ||||||  |||||||  ||| |||| ||||||| ||| ||||    
T  2612737 aatactaacgtgtctgcagacacctttcgttcctccgcaaagactcgtcgtcacc 2612791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 256
Target Start/End: Complemental strand, 18246257 - 18246101
Alignment:
Q  99 atataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggag 198  Q
    ||||||||||| | |  ||||| ||||||||||||  ||||||||| | ||||||| || ||||||||||||| ||| |  | | |||||||||||||||    
T  18246257 atataagggtgacttatcttcaccctcaaggtatgaatcacttttctc-acactttttatacactctttctcaattctaatactcacttgagcgttggag 18246159  T
Q  199 tactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccatacc 256  Q
    |  |||||||| | |||  |||||||  |||||||| |||||||||| ||||| ||||    
T  18246158 tgttaacgtgcttacagacacctttcgttccaccgccaagactcatcaccaccgtacc 18246101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 48637596 - 48637508
Alignment:
Q  169 tcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgc-gaagactcatcgccaccatacc 256  Q
    |||||||||| | ||||||||||||  |||| || ||||||||||||| |||||||  || ||||| ||||||||||||||||||||||    
T  48637596 tcagttccattactgacttgagcgtcagagtgctgacgtgcctgcaggcacctttcgttctaccgcagaagactcatcgccaccatacc 48637508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 256
Target Start/End: Original strand, 43344450 - 43344575
Alignment:
Q  129 gtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatc 228  Q
    ||||| |||||||||| || |||||| |||||||||||||| |||| ||  | ||||||||||||| |||| |||||||  ||||||  |||||||   |    
T  43344450 gtatgattcacttttcccc-cactttttacacactctttct-agtttcaatactgacttgagcgttcgagtgctaacgtttctgcagacacctttcatcc 43344547  T
Q  229 caccgcgaagactcatcgccaccatacc 256  Q
    |||||| |||||||||||||||| ||||    
T  43344548 caccgcaaagactcatcgccaccgtacc 43344575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 1659802 - 1659874
Alignment:
Q  136 tcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtg 208  Q
    ||||||||||| ||||||  |||||| |||||||||| ||||| | ||||||||||||||||||  |||||||    
T  1659802 tcacttttcacaacacttcttacacattctttctcagatccattattgacttgagcgttggagtgataacgtg 1659874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 12032221 - 12032300
Alignment:
Q  91 gcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctca 171  Q
    ||||||||||||||||||| | | | |||| ||||||| |||| |||| ||| ||| ||||||||||||||||||||||||    
T  12032221 gcgcgcctatataagggtgacttagtttca-cctcaagttatgattcattttacacaacactttctacacactctttctca 12032300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 23280252 - 23280361
Alignment:
Q  113 ttgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctg 212  Q
    |||||||| ||||| || ||  |||||||||||| ||||| |  |||||| ||||||||||||||| | ||||||||| ||| ||||  |||| || |||    
T  23280252 ttgcttcaccctcatggcattattcacttttcacaacactat--acacacactttctcagttccattactgacttgagagtttgagtgataacatgtctg 23280349  T
Q  213 caggtacctttc 224  Q
    |||| |||||||    
T  23280350 caggcacctttc 23280361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 30732552 - 30732515
Alignment:
Q  179 caatgacttgagcgttggagtactaacgtgcctgcagg 216  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  30732552 caatgacttgagcattggagtgctaacgtgcctgcagg 30732515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 16299591 - 16299698
Alignment:
Q  140 ttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaaga 239  Q
    ||||||| ||||||  ||| ||||||||||||||| ||| | | |||||| ||| ||||| |||| |||| |||||  || ||||  |||||||| ||||    
T  16299591 ttttcacaacacttcttacgcactctttctcagtttcattacttacttgaacgtcggagtgctaatgtgcatgcagacacgtttcgttccaccgc-aaga 16299689  T
Q  240 ctcatcgcc 248  Q
    |||||||||    
T  16299690 ctcatcgcc 16299698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 18147505 - 18147274
Alignment:
Q  15 gcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcatt 114  Q
    ||||||||| || ||||| ||||||||||| ||| |||||||||||| |||||| || ||   ||||| ||||||||||| |||||||||||||| ||||    
T  18147505 gcgaggatcaccttacacatgtcctctaaccgtccctaatcacacgctgcaaaacccagaggcggttaatcccaatgcgcacctatataagggtgacatt 18147406  T
Q  115 gcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgca 214  Q
    |||||| ||| ||||||||  ||||||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||  |||||| ||| ||    
T  18147405 gcttcaccctaaaggtatgagtcacttttcacaacactttctacacactctttctcggttccattagtgacttgagcgttggagtgttaacgttcctaca 18147306  T
Q  215 ggtacctttctatccaccgcgaagactcatcg 246  Q
    || |||||||  | ||||| ||||||||||||    
T  18147305 ggcacctttcgtttcaccgagaagactcatcg 18147274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 30681178 - 30680949
Alignment:
Q  28 tacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaa 127  Q
    |||||||||| | ||||  | ||||||||||||||||||||  ||||   |||||||| ||| |||||||||| ||| |||| |||||||||||||||||    
T  30681178 tacacgtgtcttttaaccttttctaatcacacgccgcaaaactcggaggcggttattctcaacgcgcgcctatctaaaggtgacattgcttcatcctcaa 30681079  T
Q  128 ggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctat 227  Q
    |||||| |||||||||||| | || |||||||| |||||| |||||| ||| | |||||||||||||||||| ||||||||  |||||  |||||||       
T  30681078 ggtatgattcacttttcacaatacattctacacgctctttatcagtttcattactgacttgagcgttggagtgctaacgtgattgcagacacctttcgtc 30680979  T
Q  228 ccaccgcgaagactcatcgccaccataccg 257  Q
    |||||||||||||||||| ||||| |||||    
T  30680978 ccaccgcgaagactcatctccaccttaccg 30680949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 19305664 - 19305434
Alignment:
Q  14 cgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcat 113  Q
    |||||||||| |||||||||||||||||||   || |||||||||| ||||||||  || ||  | |||| |  ||  ||||||||| |||||||| | |    
T  19305664 cgcgaggatcaccctacacgtgtcctctaatcttccctaatcacaccccgcaaaactcgaaagagtttatccttaactcgcgcctatttaagggtgacct 19305565  T
Q  114 tgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgc 213  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| | |||||||||||||  ||| |||||||||||      
T  19305564 tgcttcaccctcaaggtatgattcacttttcacaacactttctacacactcttactcagttccattactgacttgagcgtttaagtgctaacgtgcctct 19305465  T
Q  214 aggtacctttctatccaccgcgaagactcat 244  Q
    ||| |||||||  |||||||| |||| ||||    
T  19305464 aggaacctttcgttccaccgcaaagattcat 19305434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 11087701 - 11087473
Alignment:
Q  15 gcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcatt 114  Q
    ||||||||| |||||||||||||||||||| |||  |||| |||||||||| ||||||||    ||||| | ||| |||| ||||||||||||||   ||    
T  11087701 gcgaggatcaccctacacgtgtcctctaaccgtccttaattacacgccgcataatccggagacagttatgctcaacgcgcacctatataagggtgaactt 11087602  T
Q  115 gcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgca 214  Q
    | ||||||||||||||||| |||||||||||| ||||  |||||| |||||||||||||| ||| | |||||| || ||   ||| |||| ||| |||||    
T  11087601 gtttcatcctcaaggtatgattcacttttcacaacacaatctacatactctttctcagttacattactgacttaagggtcaaagtgctaatgtgtctgca 11087502  T
Q  215 ggtacctttctatccaccgcgaagactca 243  Q
    |  | |||||  |||||||||||||||||    
T  11087501 gacagctttcgttccaccgcgaagactca 11087473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 33597063 - 33596841
Alignment:
Q  12 cgcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggc 111  Q
    ||||||||| ||  |||||| |||||||||||| | | ||||||| |||||||| |||||||      |||| | ||| ||||||||||||||| |||      
T  33597063 cgcgcgagggtcatcctacatgtgtcctctaaccgcccctaatcatacgccgcataatccggtgacaattatgctcaaagcgcgcctatataagagtgaa 33596964  T
Q  112 attgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
     ||||||||||||||||||||| |||  ||||||| |||||||||||||||| ||||| |||| ||| | ||| ||||||||| ||||  ||| ||||||    
T  33596963 cttgcttcatcctcaaggtatgattccattttcacaacactttctacacactttttcttagtttcattactgagttgagcgttagagtgttaatgtgcct 33596864  T
Q  212 gcaggtacctttctatccaccgc 234  Q
    |||||||||||||  ||||||||    
T  33596863 gcaggtacctttcgttccaccgc 33596841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 15480245 - 15480440
Alignment:
Q  27 ctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctca 126  Q
    ||||||||||| ||||| |||| ||||||||| |||| |||||| |||   ||||||| ||||   || |||||||||||||| | | ||||||  ||||    
T  15480245 ctacacgtgtcttctaattgtccctaatcacatgccgtaaaatctggatgcggttatttccaacatgcacctatataagggtgacttagcttcactctca 15480344  T
Q  127 aggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctt 222  Q
    ||||||| |||||||||||| |||||||||||||||| |||||||||| ||| | ||||||||| ||| ||||  |||| ||| |||||| |||||    
T  15480345 aggtatgattcacttttcacaacactttctacacactttttctcagtttcattattgacttgagagttcgagtgataacttgcttgcaggcacctt 15480440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 20148450 - 20148289
Alignment:
Q  79 gttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccat 178  Q
    ||||||| ||| ||| ||||||||||||||| | |||||||| | |||||||||| |||||||||||| |||||||||  ||||||||||||| ||||||    
T  20148450 gttattctcaacgcgtgcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactctttctcaattccat 20148353  T
Q  179 caatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactc 242  Q
     | | ||||||||| |||||| |||||||| ||||| | || ||||  |||||||| |||||||    
T  20148352 tactaacttgagcgatggagtgctaacgtgtctgcatgcacttttcgttccaccgcaaagactc 20148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 22184378 - 22184539
Alignment:
Q  79 gttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccat 178  Q
    ||||||| ||| ||| ||||||||||||||| | |||||||| | |||||||||| |||||||||||| |||||||||  ||||||||||||| ||||||    
T  22184378 gttattctcaacgcgtgcctatataagggtgaccttgcttcaccatcaaggtatgattcacttttcacaacactttct--acactctttctcaattccat 22184475  T
Q  179 caatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactc 242  Q
     | | ||||||||| |||||| |||||||| ||||| | || ||||  |||||||| |||||||    
T  22184476 tactaacttgagcgatggagtgctaacgtgtctgcatgcacttttcgttccaccgcaaagactc 22184539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 689747 - 689948
Alignment:
Q  12 cgcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggc 111  Q
    |||||||||| | |||| ||||| |||||||||||||  ||||||||||||||||||  ||||   | ||||   ||| | ||||||||||||||||| |    
T  689747 cgcgcgaggaccacccttcacgtatcctctaactgtccttaatcacacgccgcaaaactcggagacgattatgatcaacgtgcgcctatataagggtgac 689846  T
Q  112 attgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
     ||| | || |||||||||| | |||||||||||| ||||||| ||||||| ||||||||||||||| | |||||||||| ||| ||| |||| || |||    
T  689847 cttgat-cagcctcaaggtacgattcacttttcacaacactttatacacacactttctcagttccattactgacttgagcattgcagtgctaatgtacct 689945  T
Q  212 gca 214  Q
    |||    
T  689946 gca 689948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 248
Target Start/End: Original strand, 19730554 - 19730715
Alignment:
Q  86 ccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgac 185  Q
    ||||||||| ||||||||||||||   |||||||| ||||||||||    ||||||| ||| ||||||  ||||||||||||||||||||||| | ||||    
T  19730554 ccaatgcgcacctatataagggtgaacttgcttcaccctcaaggtacacatcactttacacgacacttcttacacactctttctcagttccattattgac 19730653  T
Q  186 ttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcc 248  Q
    |||||||||||||| ||||| |||||||| | || || || |||||| |||||||||| ||||    
T  19730654 ttgagcgttggagtgctaacatgcctgcatgcactttact-tccaccacgaagactcaacgcc 19730715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 17380275 - 17380100
Alignment:
Q  36 tcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggt 135  Q
    ||||||||||||  |||||||||||||  |||| |  ||   |||||||||||| || |||||||||||||||| | |||| ||| ||| |||||| | |    
T  17380275 tcctctaactgttcctaatcacacgccataaaacctagaggcggttattcccaacgcacgcctatataagggtgaccttgcgtcaacctgaaggtaagat 17380176  T
Q  136 tcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
    ||||||||||| ||||||| | |||||||||||||||||| || | |||||||  | ||||||||||||| |||||    
T  17380175 tcacttttcacaacactttattcacactctttctcagttctattactgacttggacattggagtactaacatgcct 17380100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 22572242 - 22571996
Alignment:
Q  16 cgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattg 115  Q
    |||||||| ||| |||||||||||||||| ||| ||||||| ||  |||| || | |||   |||||| | ||| ||||||| |||||| ||||   |||    
T  22572242 cgaggatcaccccacacgtgtcctctaaccgtccctaatcatacttcgcataacctggagacggttatgctcaacgcgcgccaatataaaggtgaacttg 22572143  T
Q  116 cttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcag 215  Q
    ||||| ||||||| |||| |||||||| ||| |||| ||||||||||||||| ||| |||||| | |||| |||||||   ||| |||||||||||||||    
T  22572142 cttcaccctcaagatatgattcactttacacaacaccttctacacactcttt-tcaattccattactgacatgagcgtcatagtgctaacgtgcctgcag 22572044  T
Q  216 gtacctttctatccaccgcgaagactcatcgccaccataccgaaaatc 263  Q
      ||||||   ||||| ||||||||| || |||||||||  |||||||    
T  22572043 ccaccttttgttccacggcgaagactgattgccaccatattgaaaatc 22571996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 34572963 - 34573086
Alignment:
Q  92 cgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagc 191  Q
    |||||||||||||||||| | |  ||||| |||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| || | | ||||||||    
T  34572963 cgcgcctatataagggtgacttaacttcaccctcaatgtatgattcacttttcaccacactttctacacactttttcttagttctattactaacttgagc 34573062  T
Q  192 gttggagtactaacgtgcctgcag 215  Q
    ||||||||| ||| ||| ||||||    
T  34573063 gttggagtattaatgtgtctgcag 34573086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 9277293 - 9277419
Alignment:
Q  115 gcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgca 214  Q
    |||||| |||||||||||| |||||||| | ||||||||| |||| |||||||||||||||||  | |||||||||||||  ||| |||||||| |||||    
T  9277293 gcttcaccctcaaggtatgattcacttt-ctccacactttttacatactctttctcagttccaatactgacttgagcgttatagtgctaacgtgtctgca 9277391  T
Q  215 ggtacctttctatccaccgcgaagactc 242  Q
    || |||||||  |||||||| |||||||    
T  9277392 ggaacctttcgttccaccgcaaagactc 9277419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 9403300 - 9403173
Alignment:
Q  86 ccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgac 185  Q
    |||| |||| ||||||||||||||   |||||||| ||||||||||    ||||||| ||| ||||||  ||||||||||||||||||||||| | ||||    
T  9403300 ccaacgcgcacctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttctcagttccattattgac 9403201  T
Q  186 ttgagcgttggagtactaacgtgcctgc 213  Q
    |||||||| ||||| |||||||||||||    
T  9403200 ttgagcgtcggagttctaacgtgcctgc 9403173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 34187397 - 34187263
Alignment:
Q  115 gcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgca 214  Q
    |||||| ||||||||||   |||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||| ||||| || |||||||| |||||    
T  34187397 gcttcaccctcaaggtacaattcacttt-caccacactttttacacactctttctcagttccattactgacttgagtgttggtgtgctaacgtgtctgca 34187299  T
Q  215 ggtacctttctatccaccgcgaagactcatcgccac 250  Q
    |  |||||||  |||||||| |||||| ||| ||||    
T  34187298 gacacctttcgttccaccgcaaagacttatcaccac 34187263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 251
Target Start/End: Original strand, 9291990 - 9292147
Alignment:
Q  93 gcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcg 192  Q
    |||||||||||| ||||   | |||||| |||||||||||| |||||||||| ||||||||| |||| ||| |||||||||||||  | |||||||||||    
T  9291990 gcgcctatataaaggtgagttagcttcaccctcaaggtatgattcacttttc-ccacactttttacatactatttctcagttccaatactgacttgagcg 9292088  T
Q  193 ttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccacc 251  Q
    || | || ||||||||| |||||| |||||||  |||||||  ||||||| || |||||    
T  9292089 ttagcgtgctaacgtgcttgcaggcacctttcgttccaccgtaaagactcctcaccacc 9292147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 16343657 - 16343542
Alignment:
Q  136 tcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcg 235  Q
    ||||||| ||| ||||||  |||||  ||| |||||||||||| | ||||||||| |||||||| |||||||||||||||| ||| |||  ||||| |||    
T  16343657 tcactttccacaacacttcttacactttctctctcagttccattactgacttgagtgttggagtgctaacgtgcctgcaggcacccttcgctccactgcg 16343558  T
Q  236 aagactcatcgccacc 251  Q
    ||||||||||||||||    
T  16343557 aagactcatcgccacc 16343542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 31423731 - 31423888
Alignment:
Q  16 cgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattg 115  Q
    |||||||| ||||||| ||||||||||| |||| |  |||||||| |||| || |||||   ||| || |||||  ||||||||||||||||||   |||    
T  31423731 cgaggatcaccctacatgtgtcctctaattgtccccgatcacacgtcgcataacccggacacggt-atgcccaacacgcgcctatataagggtgcacttg 31423829  T
Q  116 cttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagtt 174  Q
    ||||| |||||||  ||| ||||||| |||| |||||||||||| ||||||||||||||    
T  31423830 cttcaccctcaagacatgattcacttctcacaacactttctacatactctttctcagtt 31423888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 19331695 - 19331799
Alignment:
Q  138 acttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaa 237  Q
    ||||| ||| |||||||||| || |||||||| |||||||| | |||||| ||||| ||||||||||||| |||||| | |||||||  |||||||||||    
T  19331695 actttacacaacactttctatactctctttcttagttccattactgacttaagcgtcggagtactaacgtacctgcaagcacctttcgttccaccgcgaa 19331794  T
Q  238 gactc 242  Q
    |||||    
T  19331795 gactc 19331799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 31295506 - 31295654
Alignment:
Q  94 cgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgt 193  Q
    ||||||| ||||||||   |||||||| |||| |||||    ||||||||||| ||||||  ||||||||||||||||||| ||| | ||||||||||||    
T  31295506 cgcctatgtaagggtgaacttgcttcaccctcgaggtacatatcacttttcacaacacttcatacacactctttctcagtttcattactgacttgagcgt 31295605  T
Q  194 tggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactc 242  Q
     | ||| ||||| |||||||||| | |||||  |||||| |||||||||    
T  31295606 cgaagtgctaacatgcctgcaggcaactttcgttccacctcgaagactc 31295654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 3404855 - 3404926
Alignment:
Q  116 cttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgactt 187  Q
    ||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  3404855 cttcaccctcaaggtatgattcatttttcacaacactttctacacactctttctcagttccattactgactt 3404926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 16131094 - 16130993
Alignment:
Q  88 aatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgactt 187  Q
    |||||||||||||||||||||    ||| |||| |||||||||||| ||||| |||||| |||||||||  ||||||||| |||||||||| | ||||||    
T  16131094 aatgcgcgcctatataagggtaaacttgtttcaccctcaaggtatgattcacgtttcacaacactttctgtacactctttatcagttccattactgactt 16130995  T
Q  188 ga 189  Q
    ||    
T  16130994 ga 16130993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 27860875 - 27861040
Alignment:
Q  50 ctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccac 149  Q
    |||||||||||||||| || |||||   ||||||  ||||  |||||||||| |||||||   |||||||| |||||| |||    ||||||||||| ||    
T  27860875 ctaatcacacgccgcataacccggagacggttatggccaacacgcgcctataaaagggtgaacttgcttcaccctcaaagtacacatcacttttcacaac 27860974  T
Q  150 actttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcag 215  Q
    ||||  ||||| |||| | |||||||||| | ||||||||| ||| |||||||||| |||||||||    
T  27860975 acttcttacactctctctttcagttccattactgacttgagtgttagagtactaacatgcctgcag 27861040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 12449546 - 12449705
Alignment:
Q  86 ccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgac 185  Q
    |||| ||||||||||||||||||    ||| |||| ||||||||||    ||||||| ||| ||||||  |||||||||||| |||| ||||| | ||||    
T  12449546 ccaacgcgcgcctatataagggtaaacttgattcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagctccattactgac 12449645  T
Q  186 ttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatc 245  Q
    ||||||||  |||| ||||||||||| |||  |||||||   ||||| ||||||||||||    
T  12449646 ttgagcgtcagagtgctaacgtgcctacagacacctttcgtcccaccacgaagactcatc 12449705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 22497312 - 22497423
Alignment:
Q  137 cacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcga 236  Q
    |||||||||| ||||||| || || |||| | || ||||||| | |||||||||||| ||||| |||||||| ||||| | |||||||  |||| |||||    
T  22497312 cacttttcacaacactttttatactctctctttctgttccattactgacttgagcgtcggagtgctaacgtgtctgcaagcacctttcgttccatcgcga 22497411  T
Q  237 agactcatcgcc 248  Q
    ||||||||||||    
T  22497412 agactcatcgcc 22497423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 14268556 - 14268440
Alignment:
Q  90 tgcgcgcctatataagggtggcattgcttcatcc-tcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttg 188  Q
    |||| ||||||||||||||| | | |||||| || ||| | |||| |||||||||||  |||||||||||||||| | ||| |||||||| | ||||||     
T  14268556 tgcgtgcctatataagggtgacttagcttcacccctcacgatatgattcacttttcaaaacactttctacacactatgtcttagttccattactgacttc 14268457  T
Q  189 agcgttggagtactaac 205  Q
    ||||||||||| |||||    
T  14268456 agcgttggagtgctaac 14268440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 19277039 - 19277131
Alignment:
Q  86 ccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccat 178  Q
    |||| |||||||||||||||||||   |||||||| ||||||||||    ||||||||||| ||||||  |||||||||||||||| ||||||    
T  19277039 ccaaagcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcatttccat 19277131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 25008413 - 25008477
Alignment:
Q  146 ccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcc 210  Q
    ||||||||| |||||||||||||||| |||||| | ||||||||||||||||||  |||||||||    
T  25008413 ccacactttttacacactctttctcaattccattactgacttgagcgttggagtgttaacgtgcc 25008477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 244
Target Start/End: Complemental strand, 34064317 - 34064165
Alignment:
Q  92 cgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagc 191  Q
    ||||||||||||||||||   |||||||| ||||||||||    ||||||||||| ||||||  |||||||||||||| |||| ||| | |||||||| |    
T  34064317 cgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttcttagtttcattactgacttgaac 34064218  T
Q  192 gttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcat 244  Q
    ||   |||  |||||||||||||   |||||||  || |||| ||||||||||    
T  34064217 gtcatagtgttaacgtgcctgcacacacctttcgttctaccgtgaagactcat 34064165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 4251034 - 4251133
Alignment:
Q  113 ttgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctg 212  Q
    |||||||| ||||||| |||| || ||||||||| ||||| ||| |||||||||||||| || ||| | |||||||| |||||||||  || ||||||||    
T  4251034 ttgcttcaccctcaagatatgatttacttttcacaacactctctccacactctttctcattttcattactgacttgaacgttggagtgttatcgtgcctg 4251133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 14080567 - 14080474
Alignment:
Q  130 tatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttc 224  Q
    |||| |||||||||||| |||||| |||||||||||||||||||| ||| | | ||||||||||  |||| |||| ||||||| ||| |||||||    
T  14080567 tatgattcacttttcacaacacttactacacactctttctcagtt-cattactaacttgagcgtcagagtgctaatgtgcctgtaggcacctttc 14080474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 12424282 - 12424415
Alignment:
Q  91 gcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgag 190  Q
    |||||||||||||||||||   |||||||| ||| ||||||     |||||||||| ||||||| || ||  ||| |||||||||||| | ||||||||     
T  12424282 gcgcgcctatataagggtgaacttgcttcacccttaaggtacacaacacttttcacaacactttttagactttctctctcagttccattactgacttgat 12424381  T
Q  191 cgttggagtactaacgtgcctgcaggtacctttc 224  Q
     || | ||| |||||||||||||||| |||||||    
T  12424382 tgtcgtagtgctaacgtgcctgcaggcacctttc 12424415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 10115659 - 10115758
Alignment:
Q  97 ctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttgg 196  Q
    |||||||||| || | | |||||| |||| ||||||| |||||||||||| | ||||| ||| | ||||||||||||| ||| | |||||||||| ||||    
T  10115659 ctatataaggctgacttagcttcaccctcgaggtatgattcacttttcacaaaactttttactcgctctttctcagtttcattactgacttgagcattgg 10115758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 30654621 - 30654564
Alignment:
Q  184 acttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagact 241  Q
    |||||||| |||||||| ||||||| ||||||| ||| |||||||||||| |||||||    
T  30654621 acttgagcattggagtattaacgtgtctgcaggcacccttctatccaccgtgaagact 30654564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 12203631 - 12203683
Alignment:
Q  116 cttcatcctcaaggtatggttcacttttcaccacactttctacacactctttc 168  Q
    ||||| |||||| ||||| |||||||||||| |||||||||||| ||||||||    
T  12203631 cttcaccctcaaagtatgattcacttttcacaacactttctacatactctttc 12203683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 18566779 - 18566693
Alignment:
Q  92 cgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccat 178  Q
    ||||||||||||  ||||   |||| ||| ||||||||||   ||||||||| || || ||||||||||| ||||||||||||||||    
T  18566779 cgcgcctatatagaggtgaacttgcctcaccctcaaggtagacttcactttttacaacgctttctacacaatctttctcagttccat 18566693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 2674457 - 2674661
Alignment:
Q  6 gtccgtcgcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataag 105  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||   |||||| | ||| |||||| ||||||||    
T  2674457 gtccgtcgcgcgaggatcaccctacacgtgtcctctaactgtccctaatcacacgccgcaaaatccggagacggttatgctcaacgcgcgcttatataag 2674556  T
Q  106 ggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaac 205  Q
    ||||   || |||||||||||||||||| |||||||||||| |||||||||||||||    |||||||| ||| | ||||||| |||||||||| |||||    
T  2674557 ggtgaacttacttcatcctcaaggtatgattcacttttcacaacactttctacacac----tctcagttacattattgacttgtgcgttggagtgctaac 2674652  T
Q  206 gtgcctgca 214  Q
     || |||||    
T  2674653 atgactgca 2674661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 47253479 - 47253242
Alignment:
Q  12 cgcgcgaggatccccctacacgtgtcctctaactg-tctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtgg 110  Q
    |||||||||||| | ||||| ||||||||||| || ||||||||||||| |||||||| |||||    ||||||  || ||||||||||||||||||||     
T  47253479 cgcgcgaggatcactctacatgtgtcctctaattgctctctaatcacacaccgcaaaacccggagacagttattatca-tgcgcgcctatataagggtga 47253381  T
Q  111 cattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcc 210  Q
    | | |||||| |||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||    
T  47253380 cttagcttcaccctcaaggtatgattcacttttcacaacactttttacacactctttctcagttccattactgacttgagcgttggagtgctaacatgcc 47253281  T
Q  211 tgcaggtacctttctatccaccgcgaagactcatcgcca 249  Q
    |||| | ||||||    ||||| ||||||||| ||||||    
T  47253280 tgcaagcaccttttgtcccaccccgaagactcgtcgcca 47253242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 12683987 - 12683753
Alignment:
Q  12 cgcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggc 111  Q
    |||| ||||||| || |||| |||||||||| |||||  |||||| ||| |||| ||  ||||   |||||| |  |||||||||||| |||||||||      
T  12683987 cgcgtgaggatcaccttacatgtgtcctctagctgtccgtaatcatacgtcgcataactcggagacggttatgcttaatgcgcgcctagataagggtgaa 12683888  T
Q  112 attgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
     |||||||| ||| |||||||| |||||||||||| ||||||||||||||||||||||||||| ||| | | |||||||||||||||| |||||||||||    
T  12683887 cttgcttcacccttaaggtatgattcacttttcacaacactttctacacactctttctcagtttcattactaacttgagcgttggagtgctaacgtgcct 12683788  T
Q  212 gcaggtacctttctatccaccgcgaagactcatcg 246  Q
    ||||| |||||||  |||||||| |||||||||||    
T  12683787 gcaggcacctttcgttccaccgcaaagactcatcg 12683753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 19809824 - 19809660
Alignment:
Q  91 gcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgag 190  Q
    |||||||||| |||||||| | | | |||| |||||||||||  |||||||||||| |||||||||||||||||||||| |||| ||| | |||||||||    
T  19809824 gcgcgcctatgtaagggtgacttagtttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagtttcattactgacttgag 19809725  T
Q  191 cgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccatacc 256  Q
    ||||||||| ||||| || ||||||| |||||||  || ||||||||||||||||| |||| ||||    
T  19809724 cgttggagtgctaacatgtctgcaggaacctttc-gtcaaccgcgaagactcatcgtcaccgtacc 19809660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 246
Target Start/End: Original strand, 15742081 - 15742276
Alignment:
Q  51 taatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccaca 150  Q
    ||||||||||||||| || |||||   ||||||  ||||  ||||||||||||||||||   ||||||||  |||||||||    ||||||||||| |||    
T  15742081 taatcacacgccgcataacccggagacggttatggccaacacgcgcctatataagggtgaatttgcttcagtctcaaggtacacatcacttttcacaaca 15742180  T
Q  151 ctttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcg 246  Q
    |||  |||||||| |||||||||||||| | ||||||||||||  |||| |||||||||| ||||| |||||||  |||||| |||||||||||||    
T  15742181 cttcttacacactttttctcagttccattactgacttgagcgtaagagtgctaacgtgccagcaggcacctttcgctccaccacgaagactcatcg 15742276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 29157304 - 29157082
Alignment:
Q  12 cgcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggc 111  Q
    |||| |||||||  |||||| |||||||||||| ||| |||||||   |||||| || || ||   |||||| | | | |||||||||||||||||||      
T  29157304 cgcgtgaggatcatcctacatgtgtcctctaaccgtccctaatcattagccgcataacccagagacggttatcctctacgcgcgcctatataagggtgaa 29157205  T
Q  112 attgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
     || ||||| | ||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||| | | |||||||||||||||| | |||||| ||    
T  29157204 cttacttcaccatcaaggtatggttcactttacacaacacttactacacactttttctcagttccattactaacttgagcgttggagtgcaaacgtgtct 29157105  T
Q  212 gcaggtacctttctatccaccgc 234  Q
    ||| | |||||||  ||||||||    
T  29157104 gcatgcacctttcgttccaccgc 29157082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 15514533 - 15514678
Alignment:
Q  95 gcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgtt 194  Q
    |||||||||||||||   |||||||| ||||||||||    ||||||| ||| ||||||  |||||||||||| |||||||||| | |||||||||||||    
T  15514533 gcctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagttccattactgacttgagcgtt 15514632  T
Q  195 ggagtactaacgtgcctgcaggtacctttctatccaccgcgaagac 240  Q
    ||||| ||||||||||| |||| ||| |||  ||||||||||||||    
T  15514633 ggagtgctaacgtgcctacaggcacccttcgttccaccgcgaagac 15514678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 19643903 - 19643659
Alignment:
Q  12 cgcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggc 111  Q
    |||||||||||| || || | |||||||||| | ||| |||||| ||||||||| ||  | ||   |||||| | ||| || ||||||||||||||||      
T  19643903 cgcgcgaggatcaccttatatgtgtcctctacc-gtccctaatctcacgccgcataactcagagacggttatcctcaacgcacgcctatataagggtgaa 19643805  T
Q  112 attgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
     ||| |||| |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| | |||||| ||||| ||| |  |||||| |||    
T  19643804 cttgtttcaccctcaaggtatgattcacttttcacaagactttctacacactctttctcagttccattactgacttaagcgtcggattggtaacgtacct 19643705  T
Q  212 gcaggtacctttctatccaccgcgaagactcatcgccaccataccg 257  Q
    || || ||||| |  |||| | |||||||||| |||| || |||||    
T  19643704 gcgggcaccttccgttccatcacgaagactcaacgccgccgtaccg 19643659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 5518676 - 5518505
Alignment:
Q  78 ggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttcca 177  Q
    |||||| |||||  ||||||||||||||||||   |||||||| |||||||||| |  ||||||| ||| ||||||  |||||| ||| ||||||||| |    
T  5518676 ggttatgcccaacacgcgcctatataagggtgaacttgcttcaccctcaaggtacgcatcactttccacaacacttcttacacattctctctcagttcaa 5518577  T
Q  178 tcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcca 249  Q
    | | |||||||||||||| ||| |||||||| |||||   |||||||  ||||  ||||||||| |||||||    
T  5518576 ttactgacttgagcgttgaagtgctaacgtgtctgcactcacctttcgttccattgcgaagacttatcgcca 5518505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 10981950 - 10981835
Alignment:
Q  129 gtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatc 228  Q
    ||||| |||||||||| ||||||||| ||||||||||||||| ||||||| | ||||||||| |||||||| | |||||  ||||||| |||||||   |    
T  10981950 gtatgattcacttttc-ccacactttttacacactctttctcggttccattactgacttgagtgttggagtgccaacgttgctgcaggcacctttcgtcc 10981852  T
Q  229 caccgcgaagactcatc 245  Q
    ||| |||||||||||||    
T  10981851 cactgcgaagactcatc 10981835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 16012399 - 16012568
Alignment:
Q  50 ctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccac 149  Q
    |||||||||||||||| ||  ||||   | ||||| |||| |||||||||||||||||||   |||||||| ||||||| ||    |||||| |||| |     
T  16012399 ctaatcacacgccgcataactcggatacgattattaccaacgcgcgcctatataagggtgaacttgcttca-cctcaagatacatatcacttctcacaat 16012497  T
Q  150 actttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacc 220  Q
     |||  |||||||||| |||||||||||| | |||||||||||| |||||  |||||||||||||||||||    
T  16012498 gcttcttacacactctatctcagttccattactgacttgagcgtcggagtgttaacgtgcctgcaggtacc 16012568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 256
Target Start/End: Complemental strand, 19818790 - 19818652
Alignment:
Q  117 ttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcagg 216  Q
    |||||| |||||||||  |||||||||||| |||||||||||||||||||  |  |||  |  | |||||||||||||||||| ||||| |  ||| |||    
T  19818790 ttcatcatcaaggtataattcacttttcacaacactttctacacactcttgattggtttaagtactgacttgagcgttggagtgctaacatatctgtagg 19818691  T
Q  217 tacctttctatccaccgcgaagactcatcgccaccatacc 256  Q
     |||||||  |||||||||||||||||||| |||| ||||    
T  19818690 aacctttc-gtccaccgcgaagactcatcgtcaccgtacc 19818652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 14602029 - 14602107
Alignment:
Q  137 cacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcag 215  Q
    |||||||||| ||||||  |||||||||| | |||||| ||| | |||||||||||||||| | |||||||||||||||    
T  14602029 cacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcag 14602107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 13171134 - 13171069
Alignment:
Q  159 acactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttc 224  Q
    |||||||| ||||||||||| | ||||||||| |||||||| |||||||||||||| | |||||||    
T  13171134 acactcttgctcagttccattactgacttgagagttggagtgctaacgtgcctgcaagcacctttc 13171069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 243
Target Start/End: Original strand, 14003076 - 14003184
Alignment:
Q  135 ttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgc 234  Q
    |||| ||||||  |||||||| ||| |||||||||||||||||| | ||||||||||||   ||| |||||||  || |||| |||||||  ||||||||    
T  14003076 ttcatttttcataacactttccacaaactctttctcagttccattactgacttgagcgtcatagtgctaacgttgcttcaggaacctttcgttccaccgc 14003175  T
Q  235 gaagactca 243  Q
     ||||||||    
T  14003176 aaagactca 14003184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 3982002 - 3981919
Alignment:
Q  160 cactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatc 245  Q
    |||||||| |||||||||| |  |||||||| |||||||| ||||||||| |||| | |||||||  ||||||| |||||||||||    
T  3982002 cactctttttcagttccatta--gacttgagtgttggagtgctaacgtgcatgcatgcacctttcgttccaccgtgaagactcatc 3981919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 50151775 - 50151823
Alignment:
Q  94 cgcctatataagggtggcattgcttcatcctcaaggtatggttcacttt 142  Q
    |||||||||||||||| | |||||||| |||||||||||| || |||||    
T  50151775 cgcctatataagggtgactttgcttcaccctcaaggtatgatttacttt 50151823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 26762801 - 26763022
Alignment:
Q  13 gcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggca 112  Q
    ||||||||||| || |||| |||||||||||| ||| ||||||||||||| ||||| |||||  |||||||   |||  |||||||||||| ||||| |     
T  26762801 gcgcgaggatcaccatacaagtgtcctctaaccgtccctaatcacacgccccaaaacccggaggtggttatcaacaacacgcgcctatatatgggtgtcc 26762900  T
Q  113 ttgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctg 212  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||| ||| | |||||| | | |||||||||||||||||| ||||||||||||    
T  26762901 ttgcttcaccctcaaggtatgattcacttttcacaacactttctacacactatttatgagttcctttactgacttgagcgttggagtgctaacgtgcctg 26763000  T
Q  213 caggtacctttctatccaccgc 234  Q
    || | |||||||  ||||||||    
T  26763001 caagaacctttcgctccaccgc 26763022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 5863390 - 5863140
Alignment:
Q  11 tcgcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtgg 110  Q
    |||| |||||||| |  ||||||||||||||||| ||| ||||||||| ||||  ||| |||||   ||||||| |||| ||||||||||| |||||||     
T  5863390 tcgcacgaggatcacgttacacgtgtcctctaaccgtccctaatcacatgccgtgaaacccggaggcggttatttccaacgcgcgcctatacaagggtga 5863291  T
Q  111 cattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcc 210  Q
    ||||||| || |||||||||||| ||||||||| || ||| |||||||||||||||||||||||| || | ||||||||||||| |||| |||||||||     
T  5863290 cattgctccaccctcaaggtatgattcactttttacaacattttctacacactctttctcagttcgattactgacttgagcgtttgagtgctaacgtgct 5863191  T
Q  211 tgcaggtacctttctatccaccgcgaagactcatcgccaccataccgaaaa 261  Q
    |||| | |  ||||  || |||| ||||||||||||| ||| |||||||||    
T  5863190 tgcacgcaaatttcgttctaccgtgaagactcatcgctaccgtaccgaaaa 5863140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 33 - 245
Target Start/End: Complemental strand, 39879569 - 39879356
Alignment:
Q  33 gtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcc-tcaaggta 131  Q
    |||||||| || |||  |||||||||||||||||||| ||||   ||||||| |||||| ||| ||||||||||||| |||||||||  || ||| || |    
T  39879569 gtgtcctccaaatgttcctaatcacacgccgcaaaattcggaggcggttatttccaatgtgcgtctatataagggtgacattgcttcccccctcatggca 39879470  T
Q  132 tggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccac 231  Q
    || ||||||||| || ||||||| ||||||||||||||||||| ||| | |||||||||||||  |||  ||||||| ||||||| |||||||  |||||    
T  39879469 tgattcactttttacaacactttttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttccac 39879370  T
Q  232 cgcgaagactcatc 245  Q
    | |||||| |||||    
T  39879369 cacgaagattcatc 39879356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 256
Target Start/End: Complemental strand, 29373608 - 29373404
Alignment:
Q  52 aatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacac 151  Q
    ||||||||||| |||||||||||   | || | | | |||||||||||||| |||||| |||||||||| |||||||||||| |||| ||||||| |||     
T  29373608 aatcacacgccacaaaatccggaggcgtttgtcctcgatgcgcgcctatatgagggtgacattgcttcaccctcaaggtatgattcaattttcacaacat 29373509  T
Q  152 tttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccacc 251  Q
    |||||||||||||||||||| || ||  | |||||||||| ||||||| ||||| |||||||| | |||||||  | |||||| || ||||||| |||||    
T  29373508 tttctacacactctttctcaattacacaactgacttgagcattggagtcctaacatgcctgcatgcacctttcgtttcaccgcaaaaactcatcaccacc 29373409  T
Q  252 atacc 256  Q
     ||||    
T  29373408 gtacc 29373404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 13292012 - 13292248
Alignment:
Q  11 tcgcgcgaggatccccctacacgtgtcct-ctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtg 109  Q
    |||||| |||||| ||||||||||||| | ||  | ||| |||| ||||||||||| || |||||   ||||||  |||| |||||||||||||| ||||    
T  13292012 tcgcgcaaggatcaccctacacgtgtcatgct--ccgtccctaaccacacgccgcataacccggagacggttatggccaacgcgcgcctatataatggtg 13292109  T
Q  110 gcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgc 209  Q
       |||||||| ||||||||||    ||||||||||| ||||||  |||||||||||| |||||| ||| | ||||||||||||| |||| ||||||| |    
T  13292110 aacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttttcagtttcattactgacttgagcgttagagtgctaacgtac 13292209  T
Q  210 ctgcaggtacctttctatccaccgcgaagactcatcgcc 248  Q
    ||||||  |||||||  |||||| |||||||||||||||    
T  13292210 ctgcagacacctttccttccaccacgaagactcatcgcc 13292248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 9135335 - 9135479
Alignment:
Q  97 ctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttgg 196  Q
    |||||||||||||   |||||||| |||||||||||| |||||||||||| ||| ||| |||||||||||||||| |||||| | ||||||||||||| |    
T  9135335 ctatataagggtgaatttgcttcaccctcaaggtatgattcacttttcacaacagtttttacacactctttctcaattccattactgacttgagcgttag 9135434  T
Q  197 agtactaacgtgcctgcaggtacctttctatccaccgcgaagact 241  Q
    ||| |||||||||||  | | |||||||  ||||||| |||||||    
T  9135435 agtgctaacgtgcctatatgcacctttcgttccaccgtgaagact 9135479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 21161326 - 21161211
Alignment:
Q  129 gtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatc 228  Q
    ||||| |||||||||||| ||||||||||||||| |||||| || ||||| | |||||||||||||||||| |||||||||||||||  | |||||  ||    
T  21161326 gtatgattcacttttcacaacactttctacacacactttcttagctccattactgacttgagcgttggagtgctaacgtgcctgcagaca-ctttcgttc 21161228  T
Q  229 caccgcgaagactcatc 245  Q
    |||||||||||||||||    
T  21161227 caccgcgaagactcatc 21161211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 9867937 - 9868064
Alignment:
Q  121 tcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacc 220  Q
    ||||||||||||| ||||||||| || |||||||||||| |||||| ||||||||||| | ||||||||||||  |||| ||||||| |||||| | |||    
T  9867937 tcctcaaggtatgattcacttttaacaacactttctacaaactcttcctcagttccattactgacttgagcgtcagagtgctaacgttcctgcatgcacc 9868036  T
Q  221 tttctatccaccgcgaagactcatcgcc 248  Q
    ||||   ||||||||||||||| |||||    
T  9868037 tttcgtcccaccgcgaagactcgtcgcc 9868064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 43171928 - 43172114
Alignment:
Q  15 gcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcatt 114  Q
    ||||||||| |||| | ||||||||||||||||  ||||||| | ||||||||| |||||    ||||||| |||| ||||||||||||||||||   ||    
T  43171928 gcgaggatcaccctccccgtgtcctctaactgttcctaatcaaatgccgcaaaacccggaggcagttattctcaatccgcgcctatataagggtgaagtt 43172027  T
Q  115 gcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcc 210  Q
    |||||| |||||| ||||| |||||||||||| |||||         | ||||||||||||||| | |||||||||| ||||||| ||||||||||    
T  43172028 gcttcaccctcaatgtatgattcacttttcacaacact---------cactttctcagttccattattgacttgagcattggagtgctaacgtgcc 43172114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 246
Target Start/End: Complemental strand, 12644914 - 12644753
Alignment:
Q  86 ccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcacca-cactttctacacactctttctcagttccatcaatga 184  Q
    |||| |||||||| || |||||||   |||||||| |||||| |||   |||||||||||||| ||||||| ||||||| |||||||||||||| | |||    
T  12644914 ccaacgcgcgcctctacaagggtgaacttgcttcaccctcaacgtacaattcacttttcaccaacactttccacacactttttctcagttccattactga 12644815  T
Q  185 cttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcg 246  Q
    | ||||||| ||||| ||||| |||||||| | |||||||  ||||||| ||||||||||||    
T  12644814 cctgagcgtcggagtgctaacttgcctgcatgcacctttcgttccaccgtgaagactcatcg 12644753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 7486633 - 7486525
Alignment:
Q  126 aaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttct 225  Q
    |||| ||| |||||||||||| |||| ||||||||| |||||||||||||||| | ||| |||||||||||||| |||||||||||||| | |||||||     
T  7486633 aagggatgattcacttttcacaacaccttctacacaatctttctcagttccattactgaattgagcgttggagtgctaacgtgcctgcatgcacctttca 7486534  T
Q  226 atccaccgc 234  Q
     ||||||||    
T  7486533 ttccaccgc 7486525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 16987019 - 16987213
Alignment:
Q  50 ctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccac 149  Q
    |||||||||| ||||| ||||||||   ||||||  |||| |||||||||||||||||||   |||||||| | | |||| |    ||||||||||| ||    
T  16987019 ctaatcacacaccgcataatccggagacggttatggccaacgcgcgcctatataagggtgaacttgcttcacctttaagggacacatcacttttcacaac 16987118  T
Q  150 actttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcat 244  Q
    ||||  |||||||||||||||| |||||| | || |||||| ||  |||| |||||||||| ||| | |||||||  ||||||||||||||||||    
T  16987119 acttcttacacactctttctcaattccattactggcttgagtgtcagagtgctaacgtgcccgcatgcacctttcgttccaccgcgaagactcat 16987213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 10287564 - 10287696
Alignment:
Q  91 gcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgag 190  Q
    ||||||||||||||||||    ||| | || |||||||||||   ||||||||||| ||||||  |||||||| |||||||| ||||| | |||||||||    
T  10287564 gcgcgcctatataagggtaaacttgttacaccctcaaggtatctctcacttttcacaacacttcttacacactttttctcagatccattactgacttgag 10287663  T
Q  191 cgttggagtactaacgtgcctgcaggtaccttt 223  Q
    ||||   || |||||||||||||||| ||||||    
T  10287664 cgttaaggtgctaacgtgcctgcaggaaccttt 10287696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 16203920 - 16203768
Alignment:
Q  16 cgaggatccccctacacgtgtcctctaactg-tctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgc--ctatataagggtggca 112  Q
    |||||||| |||||||||||||||||||| | || ||||||||||||| | |||  ||||   ||||||   ||| ||| ||  ||||||||||||| |     
T  16203920 cgaggatcaccctacacgtgtcctctaaccgctccctaatcacacgccacgaaacacggagacggttat---caacgcgagctcctatataagggtgact 16203824  T
Q  113 ttgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttc 168  Q
    || ||||| ||| ||||||||||||||||||||  ||||||| |||||||||||||    
T  16203823 tttcttcacccttaaggtatggttcacttttcataacactttatacacactctttc 16203768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 9573400 - 9573519
Alignment:
Q  96 cctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttg 195  Q
    |||||||||||||| | | |||||| |  ||| ||||| ||||  |||| ||||||||  |||||||||||||||||||||   | ||||||| ||||||    
T  9573400 cctatataagggtgacttagcttcacctccaatgtatgattcatgtttc-ccacacttcttacacactctttctcagttcccatattgacttgtgcgttg 9573498  T
Q  196 gagtactaacgtgcctgcagg 216  Q
    |||| ||||||||||||||||    
T  9573499 gagtgctaacgtgcctgcagg 9573519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 233
Target Start/End: Original strand, 5925443 - 5925585
Alignment:
Q  91 gcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgag 190  Q
    ||||||||| |||||||||   |||||||| |||||||| |     |||||||||| ||||||  || ||  ||| |||||||||||| | ||||||||     
T  5925443 gcgcgcctacataagggtgaacttgcttcaccctcaaggaacacaacacttttcacgacacttcttagactttctctctcagttccattactgacttgat 5925542  T
Q  191 cgttggagtactaacgtgcctgcaggtacctttctatccaccg 233  Q
    ||||||||| |||||||||||||||  |||||||  |||||||    
T  5925543 cgttggagtgctaacgtgcctgcagacacctttcgttccaccg 5925585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 16204491 - 16204340
Alignment:
Q  14 cgcgaggatccccctacacgtgtcctctaactg-tctctaatcacacgccgcaaaatccggaattggttattcccaatgc--gcgcctatataagggtgg 110  Q
    |||||||||| |||||||||||||||||||| | || |||||||||||||   |||  ||||   ||||||   ||| ||  || ||||||||||||||     
T  16204491 cgcgaggatcaccctacacgtgtcctctaaccgctccctaatcacacgccatgaaacacggagacggttat---caacgcgggctcctatataagggtga 16204395  T
Q  111 cattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactct 165  Q
      || ||||| ||| ||||||||||||||||||||| ||||||| ||||||||||    
T  16204394 attttcttcacccttaaggtatggttcacttttcacaacactttatacacactct 16204340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 1979109 - 1979052
Alignment:
Q  167 tctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttc 224  Q
    |||||||||||| | ||||||||||||  |||||||||||||| |||||| |||||||    
T  1979109 tctcagttccattactgacttgagcgtcagagtactaacgtgcttgcaggcacctttc 1979052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 2226673 - 2226601
Alignment:
Q  184 acttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccatacc 256  Q
    |||||||||||||||| |||| ||||||||||  |||||||   |||||| ||||| |||||||||| |||||    
T  2226673 acttgagcgttggagtgctaatgtgcctgcagacacctttcgtcccaccgtgaagattcatcgccactatacc 2226601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 5929024 - 5929100
Alignment:
Q  136 tcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctg 212  Q
    ||||||||||| ||||||  ||||| |||| | |||||||||| | ||||||||| |||||||| |||| |||||||    
T  5929024 tcacttttcacaacacttcttacactctctctttcagttccattactgacttgagtgttggagtgctaatgtgcctg 5929100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 34854321 - 34854243
Alignment:
Q  136 tcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgca 214  Q
    ||||||||||| ||| ||  ||||||||||||||||||| ||| | | ||||||||||  |||| |||||||| |||||    
T  34854321 tcacttttcacaacatttcttacacactctttctcagtttcattactaacttgagcgtcagagtgctaacgtgtctgca 34854243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 3586561 - 3586334
Alignment:
Q  16 cgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattg 115  Q
    ||||||||  |||||| |||||||||||| ||| ||| |||||||||||| || |  |||  ||||||  |||| |||||||||||||||||||   |||    
T  3586561 cgaggatcatcctacatgtgtcctctaaccgtccctattcacacgccgcataaccaagaagcggttatgaccaacgcgcgcctatataagggtgaacttg 3586462  T
Q  116 cttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcag 215  Q
    ||||| |||||||||||| |||||||||||| ||||||||||| |||| |||||||||||||| | |||||||||||| ||||| |||||||||| |||     
T  3586461 cttcaccctcaaggtatgattcacttttcacaacactttctactcactttttctcagttccattactgacttgagcgtcggagtcctaacgtgccggcat 3586362  T
Q  216 gtacctttctatccaccgcgaagactca 243  Q
    | |||||||  |||||||| ||||||||    
T  3586361 gcacctttcattccaccgcaaagactca 3586334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 12127554 - 12127799
Alignment:
Q  14 cgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcat 113  Q
    |||||||||| | |||||||||| ||||||| ||| ||||||||||||  |||||  || |   || ||||| ||| ||| || ||||||||| || |||    
T  12127554 cgcgaggatcactctacacgtgttctctaaccgtccctaatcacacgctacaaaactcgaaggcggatattctcaaagcgtgcatatataaggttgacat 12127653  T
Q  114 tgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgc 213  Q
    ||||||| |  ||| ||||| |||||||||||| ||||||||||||||| | |||| |||| ||| | |||||||||||||||||| |||||||||||||    
T  12127654 tgcttcaccaccaaagtatgattcacttttcacaacactttctacacacacgttcttagtttcattactgacttgagcgttggagtgctaacgtgcctgc 12127753  T
Q  214 aggtacctttctatccaccgcgaagactcatcgccaccataccgaa 259  Q
    |||||||||||   ||||||||||||| |||| ||||| |||||||    
T  12127754 aggtacctttcgtcccaccgcgaagacccatcaccaccgtaccgaa 12127799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 12169109 - 12168937
Alignment:
Q  78 ggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttcca 177  Q
    |||||||| ||| |||||||||| ||||||||||||||||||| |||||||||||  |||||||||||| |||||||||||||||||||||| |||||||    
T  12169109 ggttattctcaacgcgcgcctatttaagggtggcattgcttcaccctcaaggtataattcacttttcacaacactttctacacactctttcttagttcca 12169010  T
Q  178 tcaatgacttg-agcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcca 249  Q
    | | ||||||| |||||||||||  ||| ||||||||||  |||||||  |||||||| |||||| |||||||    
T  12169009 ttactgacttgaagcgttggagtgttaatgtgcctgcagacacctttcgttccaccgcaaagacttatcgcca 12168937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 19918956 - 19919200
Alignment:
Q  13 gcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggca 112  Q
    |||| |||||| | ||| |||| ||||||||| ||   ||||||||||||||||||||  ||   | |||||| ||  | ||||||||||||| |||  |    
T  19918956 gcgcaaggatcacgctaaacgtatcctctaacagttcttaatcacacgccgcaaaatcgagaggcgattattctcacagtgcgcctatataagagtgata 19919055  T
Q  113 ttgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctg 212  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| |||||| | ||||||  ||||| |||| |||| || ||||    
T  19919056 ttgcttcatcctcaaggtatgattcacttttcacaacactttctacatactctttctcatttccattattgactttggcgttagagttctaatgttcctg 19919155  T
Q  213 caggtacctttctatccaccgcgaagactcatcgccaccataccg 257  Q
    |||| |||||||  |||||| |||||||| |||||||||||||||    
T  19919156 caggcacctttcgttccaccacgaagactgatcgccaccataccg 19919200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 36267700 - 36267466
Alignment:
Q  12 cgcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggc 111  Q
    |||||||||||| ||||| ||||||| |||||| ||| | ||||| |||||||| ||||  ||   |||||| |   | || || |||||||||||||      
T  36267700 cgcgcgaggatcaccctatacgtgtcttctaaccgtcccaaatcatacgccgcataatcttgagacggttatccttgacgcacgtctatataagggtgaa 36267601  T
Q  112 attgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
     |||||||| |||||||||||| |||||||||||| || |||||||||||||||||||||||| ||| | ||||||||||||||||||  |||| ||| |    
T  36267600 cttgcttcaccctcaaggtatgattcacttttcacaaccctttctacacactctttctcagtttcattactgacttgagcgttggagtgttaacatgcat 36267501  T
Q  212 gcaggtacctttctatccaccgcgaagactcatcg 246  Q
    ||||| |||||||  ||||| ||||||||||||||    
T  36267500 gcaggcacctttcattccactgcgaagactcatcg 36267466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 96 - 254
Target Start/End: Original strand, 45258125 - 45258283
Alignment:
Q  96 cctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttg 195  Q
    |||||||||||||| | |||||||| |||||||||||| |||||||||||| |||||||| ||||| ||||||| |||| ||| | | |||||||| |||    
T  45258125 cctatataagggtgactttgcttcaccctcaaggtatgattcacttttcacaacactttcgacacattctttcttagtttcattacttacttgagctttg 45258224  T
Q  196 gagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccata 254  Q
    ||||  ||||||||||||||  | |||||  ||||||||||||||||||||||||||||    
T  45258225 gagtgttaacgtgcctgcagacatctttcgttccaccgcgaagactcatcgccaccata 45258283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 45715111 - 45714960
Alignment:
Q  98 tatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttgga 197  Q
    |||| ||||||| | | |||||| | |||||||||| |||| ||||||||||||||| ||||||||||||||||||| ||| | ||||||||||||||||    
T  45715111 tatacaagggtgacttagcttcaccttcaaggtatgattcaattttcaccacactttttacacactctttctcagtttcattactgacttgagcgttgga 45715012  T
Q  198 gtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcca 249  Q
    || |||||||||||||| | |||||||  ||||||  |||||||||||||||    
T  45715011 gtgctaacgtgcctgcatgcacctttcgttccaccaggaagactcatcgcca 45714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 24499983 - 24499779
Alignment:
Q  17 gaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgc 116  Q
    ||||||| | |||||||||||||| | |  || |||||||||||  |||||| ||| |   | |||||| ||| || ||||| ||||||||||   ||||    
T  24499983 gaggatctctctacacgtgtcctccagccatccctaatcacacgtagcaaaacccgaa---gattattctcaacgcacgcctttataagggtgaacttgc 24499887  T
Q  117 ttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcagg 216  Q
    |||| ||| |||||||| |||||||||||| ||| |||||||||||||||||||| |||||| | |||||||||||||||||| ||||||| |||  |||    
T  24499886 ttcacccttaaggtatgattcacttttcacaacattttctacacactctttctcatttccattactgacttgagcgttggagtgctaacgttcctagagg 24499787  T
Q  217 tacctttc 224  Q
     |||||||    
T  24499786 cacctttc 24499779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 257
Target Start/End: Original strand, 27846512 - 27846653
Alignment:
Q  116 cttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcag 215  Q
    ||||| ||||||||||   |||||||| ||| |||||||||||| ||| |||||||||||||| | |||||||| ||||||||| |||||||||||||||    
T  27846512 cttcaccctcaaggtacaattcactttacacaacactttctacaaactgtttctcagttccattactgacttgatcgttggagtgctaacgtgcctgcag 27846611  T
Q  216 gtacctttctatccaccgcgaagactcatcgccaccataccg 257  Q
    | || ||||   | || |||||||||||| |||||| |||||    
T  27846612 gcacttttcgtccaactgcgaagactcattgccaccgtaccg 27846653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 85 - 248
Target Start/End: Complemental strand, 29711145 - 29710984
Alignment:
Q  85 cccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatga 184  Q
    |||||||||||||||||||||||||   |||||||| ||||||||||    ||||||||||| ||||||  ||||| |||||  ||| |||||| | |||    
T  29711145 cccaatgcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcgtacactctctt--tcaattccattagtga 29711048  T
Q  185 cttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcc 248  Q
    ||||||||||||||| ||||||||| ||||   ||||||   |||||||||||||| |||||||    
T  29711047 cttgagcgttggagtgctaacgtgcatgcatacaccttttgttccaccgcgaagacgcatcgcc 29710984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 10923059 - 10923293
Alignment:
Q  16 cgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattg 115  Q
    |||||||| |||||||||||||||||  | |||||||||||||||||||| || ||| |    |||||  ||||  | ||  ||||||||||||   |||    
T  10923059 cgaggatcaccctacacgtgtcctcttcc-gtctctaatcacacgccgcataagccgaagactgttatgaccaacacacgtgtatataagggtgaacttg 10923157  T
Q  116 cttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcag 215  Q
    ||||| |||||||| |   ||||||||||||  ||||||||||||||||||| | |||||||| | ||||||||| || |||||  |||||||||| ||     
T  10923158 cttcaccctcaaggcacacttcacttttcacagcactttctacacactctttataagttccataactgacttgagtgtcggagtgataacgtgcctacat 10923257  T
Q  216 gtacctttctatccaccgcgaagactcatcgccacc 251  Q
      |||||||  ||||||||||||||| ||| |||||    
T  10923258 acacctttcgttccaccgcgaagactaatcaccacc 10923293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 248
Target Start/End: Complemental strand, 18135992 - 18135837
Alignment:
Q  93 gcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcg 192  Q
    |||||||||||||||||   |||||||| | || ||||||   |||||||| || ||||||  ||||||||||||||||||||||| | | |||||||||    
T  18135992 gcgcctatataagggtgaacttgcttcaccttctaggtatacatcacttttgacaacacttcttacacactctttctcagttccattactaacttgagcg 18135893  T
Q  193 ttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcc 248  Q
    |  |||||||||||||||| |||| |||||||   |||||| ||||||||| ||||    
T  18135892 tcagagtactaacgtgcctacaggcacctttcatcccaccgtgaagactcaacgcc 18135837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 20120465 - 20120322
Alignment:
Q  96 cctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttg 195  Q
    ||||||||||| |||  ||| || | |||||||||||| ||||||| ||||  ||||||| |||||||||||||||||| ||| | ||||||||| || |    
T  20120465 cctatataaggatggacttgttttaccctcaaggtatgattcacttatcacaccactttccacacactctttctcagtttcattactgacttgagagtcg 20120366  T
Q  196 gagtactaacgtgcctgcaggtacctttctatccaccgcgaaga 239  Q
    |||| |||||||||||||||  |||||||  ||||||| |||||    
T  20120365 gagtgctaacgtgcctgcagacacctttcgttccaccgtgaaga 20120322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 15825282 - 15825153
Alignment:
Q  86 ccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgac 185  Q
    |||| ||||||||||| |||||||   |||||||| ||||||||||    | ||||||||| ||||||||||||||||||||||||||||||| |  |||    
T  15825282 ccaacgcgcgcctatacaagggtgaacttgcttcaccctcaaggtacacatgacttttcacaacactttctacacactctttctcagttccattaccgac 15825183  T
Q  186 ttgagcgttggagtactaacgtgcctgcag 215  Q
    ||||||||   ||| |||||||||||||||    
T  15825182 ttgagcgtcaaagtgctaacgtgcctgcag 15825153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 24755567 - 24755473
Alignment:
Q  115 gcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgc 209  Q
    |||||||| | |||||| | |||||||||||| ||| |||||||||||| ||||  |||||||||| ||||||||| ||||||||||||||||||    
T  24755567 gcttcatcttaaaggtacgattcacttttcacaacaatttctacacactttttcagagttccatcactgacttgagggttggagtactaacgtgc 24755473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 247
Target Start/End: Original strand, 15390553 - 15390709
Alignment:
Q  91 gcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgag 190  Q
    |||||||||||||||||||   |||||||| ||||||||||    ||||||||||| ||||||  |||||||| ||| | |||||||||| | |||||||    
T  15390553 gcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactgtttattagttccatcacttacttgag 15390652  T
Q  191 cgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgc 247  Q
    |||   ||| ||||||||||   ||| | |||||  |||| ||||||||||||||||    
T  15390653 cgtcaaagtgctaacgtgccaataggcagctttcgttccatcgcgaagactcatcgc 15390709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 18770392 - 18770317
Alignment:
Q  136 tcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
    ||||||||||| |||||||||||||||||||||||| || ||| | ||||||||||||  |||| |||||||||||    
T  18770392 tcacttttcacaacactttctacacactctttctcaatttcattactgacttgagcgtcagagtgctaacgtgcct 18770317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 23257901 - 23257803
Alignment:
Q  94 cgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgt 193  Q
    |||||||||||||||| | ||| |||| ||||||||||   |||||||||| ||||||||||||||||||| || ||| |||| ||| ||||||||||||    
T  23257901 cgcctatataagggtgaccttgattcaccctcaaggtacaattcacttttc-ccacactttctacacactccttgtcatttccttcactgacttgagcgt 23257803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 247
Target Start/End: Original strand, 19050362 - 19050559
Alignment:
Q  50 ctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccac 149  Q
    ||||||| |||||||| || ||||| || |||||  |||| ||  |||||||||||||||   || |||||  |||| ||||    ||||||||||| ||    
T  19050362 ctaatcatacgccgcataacccggagttagttatggccaacgcaagcctatataagggtgaacttacttcactctcagggtacacatcacttttcacaac 19050461  T
Q  150 actttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgc 247  Q
    ||||  ||||| |||||||| ||||| || | ||||||||||||  |||| |||||| | |||||  ||||||||  ||||||||||| |||||||||    
T  19050462 acttcttacactctctttcttagttctattactgacttgagcgtcagagtgctaacgggtctgcaaatacctttcgttccaccgcgaacactcatcgc 19050559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 29137959 - 29137869
Alignment:
Q  156 tacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcg 246  Q
    ||||||||||||||||||| ||| |||||||||||||| || || ||||||| |||||||  | |||||  |||||| ||| |||||||||    
T  29137959 tacacactctttctcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacatctttcgttccacctcgatgactcatcg 29137869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 17672091 - 17671937
Alignment:
Q  94 cgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgt 193  Q
    ||||||| |||||||| | | |||||| || ||||||||| |||||||||| |||||||||  ||| | ||  ||||| ||||  || ||| |||||| |    
T  17672091 cgcctatttaagggtgacttagcttcaccc-caaggtatgattcacttttc-ccacacttttcacaaattccatctcatttcctacactgatttgagcat 17671994  T
Q  194 tggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccac 250  Q
    |||||  |||||||| ||||||  |||||||  ||||||  ||||||||||||||||    
T  17671993 tggagcgctaacgtgtctgcagacacctttcgttccaccatgaagactcatcgccac 17671937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 166
Target Start/End: Complemental strand, 18772411 - 18772296
Alignment:
Q  51 taatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccaca 150  Q
    ||||||||||||||| ||||||||    |||||  |||| | | | |||||||||||||   |||||||| |||||||||     ||||||||||| |||    
T  18772411 taatcacacgccgcataatccggagacagttatgaccaacgtgtgtctatataagggtgaacttgcttcaccctcaaggtgcacgtcacttttcacaaca 18772312  T
Q  151 ctttctacacactctt 166  Q
    ||||||||||||||||    
T  18772311 ctttctacacactctt 18772296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 14117 - 13927
Alignment:
Q  19 ggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgctt 118  Q
    ||||| || ||| ||||||||||||| ||| |||||||||| |||||||| | |||   ||||||||||||||| | ||||||||||||||   ||||||    
T  14117 ggatcaccatacgcgtgtcctctaacggtccctaatcacacaccgcaaaacctggaggcggttattcccaatgcacacctatataagggtgatcttgctt 14018  T
Q  119 catcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgc 209  Q
    || |||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||| | |||||||||| |||||||||||||||||    
T  14017 caccctcaaggtatgattcacttctcacaacactttctacacactctttctcagtttcattactgacttgagctttggagtactaacgtgc 13927  T

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Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 9800977 - 9801201
Alignment:
Q  15 gcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcatt 114  Q
    |||||| || ||||||| |||||||||||| ||| ||||||||||||||||||| ||| |||  |  |||   |||||| ||||||||||||||| ||||    
T  9800977 gcgagggtcaccctacatgtgtcctctaaccgtccctaatcacacgccgcaaaacccg-aatgcgccatttttaatgcgtgcctatataagggtgacatt 9801075  T
Q  115 gcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgca 214  Q
    |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| |||| || | ||||||||| ||| |||| ||||||||| ||||    
T  9801076 gcttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctctgttctattactgacttgagtgtt-gagtgctaacgtgcttgca 9801174  T
Q  215 ggtacctttctatccaccgcgaagact 241  Q
    || |||||||  ||||| |||||||||    
T  9801175 ggcacctttcgttccactgcgaagact 9801201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 17143643 - 17143837
Alignment:
Q  17 gaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgc 116  Q
    ||||||| ||||||| ||||||||||   ||| ||||||||||||||| ||| ||| |    ||||||  |||||| ||| ||||||||||||   |||     
T  17143643 gaggatcgccctacatgtgtcctctagtcgtccctaatcacacgccgcgaaacccgaaggcagttattttcaatgcacgcttatataagggtgatgttgt 17143742  T
Q  117 ttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
    |||| || ||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||||||    
T  17143743 ttcacccccaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgtcggagtgctaacgtgcct 17143837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 30607109 - 30606931
Alignment:
Q  33 gtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtat 132  Q
    |||||||||||| ||| |||||||||||| || ||| |||||    |||||||  || ||||||||||||||||||||| || ||||| |||||||||||    
T  30607109 gtgtcctctaaccgtccctaatcacacgcggcgaaacccggagacagttattcttaacgcgcgcctatataagggtggccttacttcaccctcaaggtat 30607010  T
Q  133 ggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
      |||||||||||| ||||||||||| |||||||||||| |||||| | |||||||||||||||| | ||||| |||||    
T  30607009 aattcacttttcacaacactttctactcactctttctcaattccattactgacttgagcgttggaatgctaacatgcct 30606931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 16704582 - 16704405
Alignment:
Q  34 tgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatg 133  Q
    ||||||||||| ||||||||||||||   ||||||||||||   ||||||  |||| |||||||||||||||||||   |||||||| ||||||||||||    
T  16704582 tgtcctctaaccgtctctaatcacacatagcaaaatccggaggcggttatcaccaacgcgcgcctatataagggtgaacttgcttcaccctcaaggtatg 16704483  T
Q  134 gttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
     |||||||||||| ||||||||||||| ||||||||||  ||||| | |||||| ||||||||| | | |||||||||    
T  16704482 attcacttttcacaacactttctacactctctttctcaactccattactgacttcagcgttggaatgccaacgtgcct 16704405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 28723665 - 28723908
Alignment:
Q  15 gcgaggatccccctacacgtgtcctctaactg-tctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcat 113  Q
    ||||||||| ||||||| |||||||||||  | || || ||||||||  ||||||||| ||    ||||||| ||| |||||||||||||||| || |||    
T  28723665 gcgaggatcaccctacatgtgtcctctaatcgctccctgatcacacgttgcaaaatccagagacagttattctcaaagcgcgcctatataaggatgacat 28723764  T
Q  114 tgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgc 213  Q
    || |||| |||| || || | |||||||||||| ||| |||||||||||||||||| |||||||| | |||||||||||||||| | | |||||||||      
T  28723765 tgtttcaccctccagatacgattcacttttcacaacattttctacacactctttcttagttccattagtgacttgagcgttggattgccaacgtgcctat 28723864  T
Q  214 aggtacctttctatccaccgcgaagactcatcgccaccataccg 257  Q
      | || ||||  |||||||||||||||||| |||||| |||||    
T  28723865 tagcacatttcgttccaccgcgaagactcattgccaccgtaccg 28723908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 243
Target Start/End: Original strand, 431285 - 431436
Alignment:
Q  92 cgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagc 191  Q
    |||||||||||||||||||   ||||||| |||||||| |   ||||||||||||  ||||||| || ||||||||||||||||||| | ||||||||||    
T  431285 cgcgcctatataagggtggacatgcttcaccctcaagggacaattcacttttcacagcactttccacgcactctttctcagttccattattgacttgagc 431384  T
Q  192 gttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactca 243  Q
    || | ||| |||||||| ||| ||| |||||||| |||||||||||||||||    
T  431385 gtcgaagtgctaacgtgtctgtaggcacctttctttccaccgcgaagactca 431436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 91 - 257
Target Start/End: Original strand, 2311802 - 2311968
Alignment:
Q  91 gcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgag 190  Q
    ||||| ||| ||||||||| |||||||||| |||||||||||| ||||| |||||| |||||||||||||| |||||||||  ||| |   ||| |||||    
T  2311802 gcgcgtctaaataagggtgacattgcttcaccctcaaggtatgattcacctttcacaacactttctacacattctttctcaaatcccttgctgatttgag 2311901  T
Q  191 cgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccataccg 257  Q
    ||||||||| |||||||  ||||||  |||||||  |||||| ||||||||| |||||||| |||||    
T  2311902 cgttggagtgctaacgtatctgcagacacctttcattccaccacgaagactcttcgccaccgtaccg 2311968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 267
Target Start/End: Original strand, 8122824 - 8123058
Alignment:
Q  35 gtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataa---gggtggcattgcttcatcctcaaggta 131  Q
    |||||||||  ||| ||||| |||||||||||||| |||     |||||||||||  |||||||||||||   ||||| |||||||||| ||||||||||    
T  8122824 gtcctctaatcgtccctaattacacgccgcaaaattcgggggcagttattcccaacccgcgcctatataataagggtgacattgcttcaccctcaaggta 8122923  T
Q  132 tggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccac 231  Q
    || |||||||||||| || ||||| ||| | | ||| ||| || ||| | |||||||||||||||||| ||||||||||||||   |||||||  |  ||    
T  8122924 tgattcacttttcacaacgctttcgacatagt-tttttcaatttcattactgacttgagcgttggagtgctaacgtgcctgcatacacctttcattttac 8123022  T
Q  232 cgcgaagactcatcgccaccataccgaaaatcattg 267  Q
    || |||||||||||| |||| ||||| |||||||||    
T  8123023 cgtgaagactcatcgtcaccgtaccggaaatcattg 8123058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 28715376 - 28715543
Alignment:
Q  12 cgcgcgaggatccccctacacgtgtcctctaactg-tctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctat-ataagggtg 109  Q
    |||||||||||| | | |||| | ||||||||| | || |||||||||| ||||||||  ||||| ||||||||| ||||||||  |||| |||||||||    
T  28715376 cgcgcgaggatcactccacacatatcctctaaccgctccctaatcacac-ccgcaaaaatcggaaatggttattctcaatgcgcatctattataagggtg 28715474  T
Q  110 gcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccat 178  Q
      |||| |||| |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  28715475 atattgtttcaccctcaaggtatgattcacttttcacaacactttatacacactctttctcagttccat 28715543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 31 - 243
Target Start/End: Complemental strand, 1771008 - 1770796
Alignment:
Q  31 acgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggt 130  Q
    |||||||||||| | ||| ||||||| |||||||| ||| ||||   |||||| | ||| |||| |||||||||||| |   |||||||||||||||||     
T  1771008 acgtgtcctctatc-gtccctaatcatacgccgcataattcggagacggttatgcacaacgcgcacctatataagggcgaacttgcttcatcctcaaggc 1770910  T
Q  131 --atggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatc 228  Q
      ||| | |||||||||| ||||||||||||||||||| ||||||||||| | | |||||||||| ||||||||||| ||| |||||  |||||||  ||    
T  1770909 gcatgat-cacttttcacaacactttctacacactcttcctcagttccattactaacttgagcgtcggagtactaacatgcttgcagacacctttccttc 1770811  T
Q  229 caccgcgaagactca 243  Q
    |||||| ||||||||    
T  1770810 caccgcaaagactca 1770796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 21342260 - 21342405
Alignment:
Q  96 cctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttg 195  Q
    |||||||||||||  | || ||||| |||||| ||||| |||||||||||| |||||||||| ||||||||| |||||||||| | ||||||||||||||    
T  21342260 cctatataagggtaaccttacttcaccctcaatgtatgattcacttttcacaacactttctatacactctttatcagttccattactgacttgagcgttg 21342359  T
Q  196 gagtactaacgtgcctgcaggtacctttctatccaccgcgaagact 241  Q
     | |  |||||||||||||  ||||||||   |||||| |||||||    
T  21342360 tactgttaacgtgcctgcatatacctttcgtcccaccgtgaagact 21342405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 21649471 - 21649376
Alignment:
Q  156 tacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccacc 251  Q
    |||||| ||| |||||||||||| | |||||||| |||||| || ||||||||| |||||| |||||||  |||||||||||||||||||||||||    
T  21649471 tacacattctctctcagttccattactgacttgatcgttggggtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcatcgccacc 21649376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 253
Target Start/End: Original strand, 14860067 - 14860229
Alignment:
Q  91 gcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgag 190  Q
    |||||||||||||||||||   |||||||| ||||||||||    ||||||||||| ||||||  |||| ||| |||||||||||||| | ||| |||||    
T  14860067 gcgcgcctatataagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacaaactgtttctcagttccattactgagttgag 14860166  T
Q  191 cgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccat 253  Q
      |  |||| |||| ||||||||| | |||||||  |||||| |||||| |||||||||||||    
T  14860167 aatcagagtgctaatgtgcctgcaagcacctttcgttccaccacgaagattcatcgccaccat 14860229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 224
Target Start/End: Complemental strand, 12516303 - 12516175
Alignment:
Q  96 cctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttg 195  Q
    ||||||||| ||||   |||||||| ||||||||||    ||||||||||| ||||||  |||||| |||||||||||||||| | | |||||||||| |    
T  12516303 cctatataaaggtgaacttgcttcaccctcaaggtacatatcacttttcacaacacttattacacaatctttctcagttccattactaacttgagcgtcg 12516204  T
Q  196 gagtactaacgtgcctgcaggtacctttc 224  Q
    |||| |||||||| ||||||| |||||||    
T  12516203 gagtgctaacgtgtctgcaggcacctttc 12516175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 248
Target Start/End: Original strand, 12731536 - 12731686
Alignment:
Q  98 tatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttgga 197  Q
    ||||||||||||   |||||||| |||||||||     ||||||||||| ||||||  || |||||||||||||||||||| |||||| ||||||| |||    
T  12731536 tatataagggtgaacttgcttcaccctcaaggttcacatcacttttcacaacacttcttatacactctttctcagttccattaatgacgtgagcgtcgga 12731635  T
Q  198 gtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcc 248  Q
    |||||||| ||  || ||| ||| |||  |||||| ||||||||| |||||    
T  12731636 gtactaacatggttgtaggcaccattcgttccacctcgaagactcttcgcc 12731686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 13085073 - 13085203
Alignment:
Q  123 ctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctt 222  Q
    |||||||| || |||||||||||| | |||||||||| | |||||||||||| ||| | |||||||||||||||| | || || |||||||||  | |||    
T  13085073 ctcaaggtttgattcacttttcacaatactttctacatattctttctcagtttcattattgacttgagcgttggaatgcttacatgcctgcagacatctt 13085172  T
Q  223 tctatccaccgcgaagactcatcgccaccat 253  Q
    ||   ||||| ||||||  ||||||||||||    
T  13085173 tcatcccaccacgaagaaccatcgccaccat 13085203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 243
Target Start/End: Original strand, 17485614 - 17485744
Alignment:
Q  113 ttgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctg 212  Q
    |||||||| ||||||||||   |||| ||| ||| ||| | ||||||||||| |||||| |||||| | ||||||||||||||| || |||| |||||      
T  17485614 ttgcttcaccctcaaggtactattcattttacacaacattctctacacactccttctcaattccattactgacttgagcgttggggtgctaatgtgccca 17485713  T
Q  213 caggtacctttctatccaccgcgaagactca 243  Q
    |||  |||||||  |||||||||||||||||    
T  17485714 cagacacctttcgttccaccgcgaagactca 17485744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 273
Target Start/End: Complemental strand, 20622524 - 20622347
Alignment:
Q  98 tatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactt--tctacacactctttctcagttccatcaatgacttgagcgttg 195  Q
    ||||||||||||   |||||||| |||||||||||| ||||||||||||  |||||  |||||||||| ||||||  |  ||| | ||||||||||||      
T  20622524 tatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaccactttatctacacactatttctctatctcattactgacttgagcgtca 20622425  T
Q  196 gagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccataccgaaaatcattgtcgtca 273  Q
     |||  |||| |||||||||| |||||||  | ||| ||||||||||| |||  || ||||| ||||| ||| |||||    
T  20622424 aagtgttaacatgcctgcaggaacctttcgtttcactgcgaagactcaacgcggccgtaccggaaatcgttgccgtca 20622347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 7835564 - 7835631
Alignment:
Q  113 ttgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatca 180  Q
    |||||||||| ||||| || |  ||||||||||| |||||||||||| ||| |||||||||| |||||    
T  7835564 ttgcttcatcatcaagatacgtatcacttttcacaacactttctacatactatttctcagtttcatca 7835631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 9007835 - 9007877
Alignment:
Q  182 tgacttgagcgttggagtactaacgtgcctgcaggtacctttc 224  Q
    ||||||||||||||||||  ||||||||||||||| |||||||    
T  9007835 tgacttgagcgttggagtgttaacgtgcctgcaggcacctttc 9007877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 12108475 - 12108387
Alignment:
Q  158 cacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcg 246  Q
    |||| |||||||||||||||| | | |||||||||| |||||  |||| ||| |||| | |||||||  |||||| ||| |||||||||    
T  12108475 cacattctttctcagttccattactaacttgagcgtcggagtggtaacatgcatgcatgcacctttcattccaccacgaggactcatcg 12108387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 95705 - 95910
Alignment:
Q  18 aggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgct 117  Q
    |||||| | ||||| |||||||||||| ||| |||||||||||||||||||  ||||  | | |||||| || ||| ||||||||||||||| | |||||    
T  95705 aggatcactctacatgtgtcctctaaccgtccctaatcacacgccgcaaaactcggaggtagatattccaaacgcgtgcctatataagggtgacgttgct 95804  T
Q  118 tcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggt 217  Q
    ||| ||| |||||||| |||||||||||| ||||||||||| ||||||||||||||||||| | | |||||||||||| |||  |||||||||||||||     
T  95805 tcaccctgaaggtatgattcacttttcacaacactttctacgcactctttctcagttccattactaacttgagcgttgaagtggtaacgtgcctgcagga 95904  T
Q  218 accttt 223  Q
    ||||||    
T  95905 accttt 95910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 26916814 - 26917025
Alignment:
Q  39 tctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttca 138  Q
    ||||| |||| ||||||||||||||||||| | |||   |||||||| ||| ||||||||||||||||| | ||||||||||| |||||||||||  |||    
T  26916814 tctaattgtccctaatcacacgccgcaaaacctggaggcggttattctcaacgcgcgcctatataagggcgacattgcttcatgctcaaggtatgactca 26916913  T
Q  139 cttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaag 238  Q
    |||||||| |||||||||||||||||| |||||||||||| | ||||||||||||| | |  |||||||||||  | | |||||||  |||| | |||||    
T  26916914 cttttcacaacactttctacacactctctctcagttccattactgacttgagcgttagtgcgctaacgtgcctaaatgcacctttcgttccatcacgaag 26917013  T
Q  239 actcatcgccac 250  Q
    |||| |||||||    
T  26917014 actcgtcgccac 26917025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 30477839 - 30477600
Alignment:
Q  16 cgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattg 115  Q
    ||||| || ||||||| ||||||||||||| |   |||||||||||  |||||  | ||   |||||||| | | || |||||||||||||||| ||||     
T  30477839 cgaggttcaccctacatgtgtcctctaactattcttaatcacacgcaacaaaactcagaggcggttattctcgacgcacgcctatataagggtgacatta 30477740  T
Q  116 cttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcag 215  Q
    ||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||| | | | |||||||||||||||||| ||||||||| |||||    
T  30477739 cttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagtttcgttactgacttgagcgttggagtgctaacgtgcatgcag 30477640  T
Q  216 gtacctttctatccaccgcgaagactcatcgccaccatac 255  Q
      | |||||    |||||||||| ||||| ||||||||||    
T  30477639 acatctttcgtctcaccgcgaagtctcattgccaccatac 30477600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 5860014 - 5859813
Alignment:
Q  15 gcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcatt 114  Q
    ||||||||| | ||||||||||| | |||| ||| |||||||| ||||||||||||| ||   ||||||| |||| ||||||||||||||||||| | ||    
T  5860014 gcgaggatcactctacacgtgtcatttaaccgtccctaatcactcgccgcaaaatccagaggcggttatttccaacgcgcgcctatataagggtgacctt 5859915  T
Q  115 gcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgca 214  Q
    ||||||  ||||||||| | ||||||| |||  ||||| || ||||||| ||||| |||||||| | |||||||||||||||||| |||||||| |||||    
T  5859914 gcttcaatctcaaggtacgattcacttctcaaaacactctcaacacactatttcttagttccattattgacttgagcgttggagtgctaacgtgtctgca 5859815  T
Q  215 gg 216  Q
    ||    
T  5859814 gg 5859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 261
Target Start/End: Complemental strand, 18323124 - 18322896
Alignment:
Q  33 gtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtat 132  Q
    ||||||||||||  || ||||||||||||||| ||| |||||    ||||||| |||  |  ||||||||||||||| | ||||||||||||||| ||||    
T  18323124 gtgtcctctaaccatccctaatcacacgccgcgaaacccggaggcagttattctcaactcttgcctatataagggtgaccttgcttcatcctcaatgtat 18323025  T
Q  133 ggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccacc 232  Q
    | |||||||||||| ||| |||||||||| ||||||||||||| || | ||||||||||||||||||  |||| || ||||| | ||||||   ||||||    
T  18323024 gattcacttttcacaacattttctacacaatctttctcagttctattactgacttgagcgttggagtgttaacatgtctgcatgcaccttttgttccacc 18322925  T
Q  233 gcgaagactcatcgccaccataccgaaaa 261  Q
    |||||||||| || || || |||||||||    
T  18322924 gcgaagactcgtcaccgccgtaccgaaaa 18322896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 244
Target Start/End: Complemental strand, 24507555 - 24507427
Alignment:
Q  116 cttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcag 215  Q
    ||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||| |||||| | |||||||| ||||||||||||||||||| |||||    
T  24507555 cttcaccctcaaggtatgattcacttttcacaacactttctagacactctttctcatttccattattgacttgatcgttggagtactaacgtgcatgcag 24507456  T
Q  216 gtacctttctatccaccgcgaagactcat 244  Q
      |||||||  |||||||| |||||||||    
T  24507455 acacctttcgctccaccgcaaagactcat 24507427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 13754921 - 13754748
Alignment:
Q  50 ctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccac 149  Q
    ||||||||||||||||||||||| |   |||||||| || |||| ||||||||||| ||| | | |||||| |||||||||| | |||||||| ||| ||    
T  13754921 ctaatcacacgccgcaaaatccgaagacggttattctca-tgcgtgcctatataagagtgacttagcttcaccctcaaggtaggattcactttacacaac 13754823  T
Q  150 actttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttc 224  Q
    ||||||||||||||||||||||||| ||| | ||||||||||| || |||  ||||||||| ||||| |||||||    
T  13754822 actttctacacactctttctcagtttcattactgacttgagcgatgtagtgttaacgtgccagcaggcacctttc 13754748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 92 - 244
Target Start/End: Original strand, 3459453 - 3459604
Alignment:
Q  92 cgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcacca-cactttctacacactctttctcagttccatcaatgacttgag 190  Q
    ||||||||||||||||||   |||||||| |||||||||| | || ||||||||||| |||||||||||||||||| ||||||||||| | |||||||||    
T  3459453 cgcgcctatataagggtgaacttgcttca-cctcaaggtacgatttacttttcaccaacactttctacacactcttgctcagttccattactgacttgag 3459551  T
Q  191 cgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcat 244  Q
    ||  ||||| |||||||||||||||| |||||||   |||||||||||||||||    
T  3459552 cgccggagtgctaacgtgcctgcaggcacctttc-gcccaccgcgaagactcat 3459604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 17927681 - 17927836
Alignment:
Q  100 tataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagt 199  Q
    ||||||||||||||||||||| ||| |||||||| ||||| |||||  |||||||||||| ||||  |||||||||||| | |||||| |||||||||||    
T  17927681 tataagggtggcattgcttcacccttaaggtatgattcacctttcataacactttctacatactcaatctcagttccattactgacttaagcgttggagt 17927780  T
Q  200 actaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccatac 255  Q
     ||||||||| |||| | |||||||   ||||| | |||| |||||||||||||||    
T  17927781 gctaacgtgcatgcatgcacctttcgtcccaccacaaagagtcatcgccaccatac 17927836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 21416924 - 21416704
Alignment:
Q  28 tacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaa 127  Q
    |||| ||||||||||||  ||  |||||||| |||||| || |||||   |||||| ||||| |||| |||||| |||||||   |||||||| ||| ||    
T  21416924 tacatgtgtcctctaaccatccataatcacaggccgcataacccggagacggttatgcccaacgcgcccctatacaagggtgaacttgcttcacccttaa 21416825  T
Q  128 ggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctat 227  Q
    |||| | |||| ||||||| ||||||||||||||||||||||||||| ||| | |||||||||||| ||||| |||||| || |||||  |||||   ||    
T  21416824 ggtacgattcatttttcacaacactttctacacactctttctcagtttcattactgacttgagcgtcggagtgctaacgagcatgcagacaccttcagat 21416725  T
Q  228 ccaccgcgaagactcatcgcc 248  Q
    ||| |||||| ||||| ||||    
T  21416724 ccatcgcgaatactcaacgcc 21416704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 6927986 - 6928162
Alignment:
Q  15 gcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcatt 114  Q
    ||||||||| | ||||||||||||||| || ||  |||||||||||| |||||| | |||   |||||||| ||| || ||||||    ||||||  |||    
T  6927986 gcgaggatcactctacacgtgtcctcttaccgttcctaatcacacgctgcaaaacctggagacggttattctcaacgcacgccta----agggtgaaatt 6928081  T
Q  115 gcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttg 195  Q
      |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  6928082 aattcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagtgttg 6928162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 17698195 - 17698350
Alignment:
Q  33 gtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtat 132  Q
    ||||||| |||| ||| ||||||||||||||| |||| || |   |||||| | | | ||||||||||||| ||||||| |||||||| |||||| ||||    
T  17698195 gtgtcctttaaccgtccctaatcacacgccgctaaattcgaagacggttatgctcgacgcgcgcctatatatgggtggccttgcttcaccctcaaagtat 17698294  T
Q  133 ggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttg 188  Q
      |||||||||||| ||||||||||||||||||||||| ||||||| | |||||||    
T  17698295 aattcacttttcacaacactttctacacactctttctcggttccattactgacttg 17698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 251
Target Start/End: Complemental strand, 15058171 - 15057998
Alignment:
Q  78 ggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttcca 177  Q
    |||||| | |||||||| | |||||||| ||| | ||| |||| |||||||||||| || | |||||||||||||||||||||| | ||||||| || ||    
T  15058171 ggttatcctcaatgcgcacttatataagtgtgacgttgtttcaccctcaaggtatgatttatttttcaccacactttctacacattttttctcaatttca 15058072  T
Q  178 tcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccacc 251  Q
    | | | ||||| |||||| ||| |||||||||||||| | |||||||  |||||| | ||||||||||| ||||    
T  15058071 ttactaacttgtgcgttgtagtgctaacgtgcctgcatgcacctttcgttccaccacaaagactcatcgtcacc 15057998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 23269311 - 23269204
Alignment:
Q  149 cactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcc 248  Q
    ||||||||||||||||||| |||||||||| | |||||| || |||||||| ||||| |||||| ||  |||||||  |||||||| |||||||||||||    
T  23269311 cactttctacacactctttatcagttccattactgacttaagtgttggagtgctaacttgcctgtagacacctttcgttccaccgcaaagactcatcgcc 23269212  T
Q  249 accatacc 256  Q
    ||| ||||    
T  23269211 accgtacc 23269204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 13765068 - 13764948
Alignment:
Q  135 ttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgc 234  Q
    |||||||| ||| ||||||||||||||||||||||||||| ||| | | |||||| | |||||||  ||||||||||||||  |||||||    ||||||    
T  13765068 ttcactttacacaacactttctacacactctttctcagtttcattactcacttgaacattggagtcttaacgtgcctgcagacacctttcgtcacaccgc 13764969  T
Q  235 gaagactcatcgccaccatac 255  Q
    |||||||| || |||||||||    
T  13764968 gaagactcttcaccaccatac 13764948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 24070946 - 24070867
Alignment:
Q  121 tcctcaaggt-atggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagt 199  Q
    |||||||||| ||| ||||||| |||| |||||||||||||||||||||| |||||||| | |||||| || ||||||||    
T  24070946 tcctcaaggttatgattcacttctcacaacactttctacacactctttcttagttccattactgacttaagtgttggagt 24070867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 24576555 - 24576684
Alignment:
Q  95 gcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgtt 194  Q
    |||||||||||||||   || ||||| ||||||||||    | ||||||||| ||||||  ||||||||| || | |||||||| | ||||||||||||     
T  24576555 gcctatataagggtgaacttccttcaccctcaaggtacacattacttttcacaacacttcttacacactcatttttagttccattactgacttgagcgtc 24576654  T
Q  195 ggagtactaacgtgcctgcaggtacctttc 224  Q
     ||||  ||||||||||||||| |||||||    
T  24576655 agagtgttaacgtgcctgcaggcacctttc 24576684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 23497133 - 23497194
Alignment:
Q  93 gcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacacttt 154  Q
    ||||||||||||||||| | |||||| | |||||||||||| |||||| ||||| |||||||    
T  23497133 gcgcctatataagggtgactttgcttaaccctcaaggtatgattcactattcacaacacttt 23497194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 178
Target Start/End: Original strand, 11776171 - 11776298
Alignment:
Q  51 taatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccaca 150  Q
    |||||||||||||||  |||||||   |||||| ||||| |||| ||||||||| ||||   ||| |||| ||||||||||    ||||||||| | |||    
T  11776171 taatcacacgccgcattatccggagacggttatgcccaacgcgcacctatataaaggtgaacttgtttcaccctcaaggtacatatcacttttcccaaca 11776270  T
Q  151 ctttctacacactctttctcagttccat 178  Q
    ||   || ||||||||||||||||||||    
T  11776271 ctccttaaacactctttctcagttccat 11776298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 20055603 - 20055536
Alignment:
Q  190 gcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccataccg 257  Q
    |||| |||||||||||||||||||||  ||| |||  ||||||||||||| |||||||| || |||||    
T  20055603 gcgtcggagtactaacgtgcctgcagacacccttcgttccaccgcgaagattcatcgccgccgtaccg 20055536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 23497201 - 23497268
Alignment:
Q  189 agcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccatacc 256  Q
    ||||||||||| ||||| ||| ||||| ||||||||  ||||| || |||||||||||||||| ||||    
T  23497201 agcgttggagtgctaacatgcgtgcagatacctttcgttccactgcaaagactcatcgccaccgtacc 23497268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 1909742 - 1909827
Alignment:
Q  157 acacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactc 242  Q
    |||||||||||||||||| ||| | |||||| ||||||| | | |||||||| ||||| | |||||||  ||||| || |||||||    
T  1909742 acacactctttctcagtttcattactgactttagcgttgaaatgctaacgtgtctgcatgcacctttcgttccactgcaaagactc 1909827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 7220586 - 7220557
Alignment:
Q  149 cactttctacacactctttctcagttccat 178  Q
    ||||||||||||||||||||||||||||||    
T  7220586 cactttctacacactctttctcagttccat 7220557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 14666883 - 14666939
Alignment:
Q  167 tctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtaccttt 223  Q
    ||||| |||||| | |||||||| ||| ||||| |||||||||||||||| ||||||    
T  14666883 tctcaattccattattgacttgatcgtcggagtgctaacgtgcctgcaggcaccttt 14666939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 24677631 - 24677715
Alignment:
Q  167 tctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccacc 251  Q
    |||||||||||  | |||||||||| ||||||| ||||| ||| |||||  ||| |||  | ||||| |||||||||||||||||    
T  24677631 tctcagttccaatactgacttgagcattggagtgctaacatgcttgcagccacccttcgtttcaccgtgaagactcatcgccacc 24677715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 8081 - 7848
Alignment:
Q  18 aggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgct 117  Q
    |||||| | |||||||||||||||||| ||  ||||| ||| || |||||| |||||   | ||||||||||||||   |||||||| |||| ||||| |    
T  8081 aggatcacgctacacgtgtcctctaaccgttgctaatgacatgctgcaaaacccggatgcgattattcccaatgcggctctatataatggtgacattgtt 7982  T
Q  118 tcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggt 217  Q
    |||  |||||  |||| |||||||||||| |||||||||||||||||||||||| || ||| | ||| ||||||||| |||| ||||||||||| || |     
T  7981 tcacactcaaattatgattcacttttcacaacactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatgc 7882  T
Q  218 acctttctatccaccgcgaagactcatcgccacc 251  Q
    |||||||  ||||||| |||||||||||||||||    
T  7881 acctttccttccaccgtgaagactcatcgccacc 7848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 28 - 208
Target Start/End: Original strand, 26994511 - 26994691
Alignment:
Q  28 tacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaa 127  Q
    |||| |||||||||||  ||| |||||||||||||||||||  || |   ||||| || ||| ||||||||||||||||||| | |||||||| || |||    
T  26994511 tacatgtgtcctctaatcgtccctaatcacacgccgcaaaactcgaagacggttactctcaacgcgcgcctatataagggtgaccttgcttcacccccaa 26994610  T
Q  128 ggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtg 208  Q
    |||||| |||||||||||| |||| ||||| ||||||||||||| |||||| | |||||||||||| ||||| ||||||||    
T  26994611 ggtatgattcacttttcacaacaccttctaaacactctttctcaattccattactgacttgagcgtcggagtgctaacgtg 26994691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 27083132 - 27083364
Alignment:
Q  16 cgaggatccccctacacgtgtcctctaactg-tctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcatt 114  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||||||||| | |||    ||||||| ||  ||||||||||  ||||||| | |     
T  27083132 cgaggatcccgcta-acgtgtcctctaactgctctctaatcacacgccgcaaaacctggagacagttattctcac-gcgcgcctatgcaagggtgactta 27083229  T
Q  115 gcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgca 214  Q
     ||||| |||||||||||| |||||||||||| ||||||||||||||||||||| ||||| | | | ||||||||| |||||||| |||||||| |||||    
T  27083230 acttcaccctcaaggtatgattcacttttcacaacactttctacacactctttcacagtttc-ttactgacttgagtgttggagtgctaacgtgtctgca 27083328  T
Q  215 ggtacctttctatccaccgcgaagactcatcgccac 250  Q
    |  || ||||  || ||||||||||||| |||||||    
T  27083329 gacacatttcgttctaccgcgaagactcttcgccac 27083364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 22903209 - 22903056
Alignment:
Q  98 tatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttgga 197  Q
    ||||||||||||  |||| |||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||| |    
T  22903209 tatataagggtgatattgtttcaccctcaaggtatgattcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgttgaa 22903110  T
Q  198 gtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccacc 251  Q
    || ||||| ||||| |    |||||||  ||||||||||| ||||||| |||||    
T  22903109 gtgctaacatgcctacgaaaacctttcgttccaccgcgaaaactcatcaccacc 22903056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 32418375 - 32418579
Alignment:
Q  12 cgcgcgaggatccccctacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggc 111  Q
    |||||||||||| |||||||||||||| |||||  || |||||||||||||||| || |||||    ||||  |  || || || ||||| |||||||      
T  32418375 cgcgcgaggatcaccctacacgtgtcccctaaccatccctaatcacacgccgcataacccggagacagttaagcttaacgcacgtctatacaagggtgaa 32418474  T
Q  112 attgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcct 211  Q
     ||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||  ||||  | ||||||||    
T  32418475 cttgcttcatcctcaaggtatgattcactcttcacaacactctctacacactctttctctgttccatcagtgacttgagcgtcagagtgttgacgtgcct 32418574  T
Q  212 gcagg 216  Q
    |||||    
T  32418575 gcagg 32418579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 86 - 248
Target Start/End: Complemental strand, 25537533 - 25537371
Alignment:
Q  86 ccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgac 185  Q
    |||| |||||||||||||||||||   || ||||| |||||||||||   ||||||||||| ||||||  |||||| |||||||||||||||| |    |    
T  25537533 ccaaggcgcgcctatataagggtgaactttcttcaccctcaaggtatacatcacttttcacaacacttcatacacaatctttctcagttccattacaatc 25537434  T
Q  186 ttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcc 248  Q
    |||||||||||||| ||||||||| |||||| |||||||  |||||||||||||||| |||||    
T  25537433 ttgagcgttggagtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcttcgcc 25537371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 239
Target Start/End: Complemental strand, 25333862 - 25333710
Alignment:
Q  87 caatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgact 186  Q
    |||||| ||| |||||||| |||   ||||||||  ||||| ||||| ||||||||| || |||||||||||||||||| ||| |||| ||| | |||||    
T  25333862 caatgcacgcttatataagagtgaacttgcttcactctcaaagtatgattcacttttaacaacactttctacacactctctcttagttacattactgact 25333763  T
Q  187 tgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaaga 239  Q
    ||||||| ||||||||||  |||||||| |||||||||  |||||||||||||    
T  25333762 tgagcgtcggagtactaatatgcctgcaagtacctttcgctccaccgcgaaga 25333710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 256
Target Start/End: Complemental strand, 8939028 - 8938868
Alignment:
Q  97 ctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttgg 196  Q
    |||||||| |||| | | |||||| |||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||  | ||||| |||| ||||    
T  8939028 ctatataacggtgacttagcttcaccctcaatgtatgattcacttttc-ccacactttttacacactctttctcagttccaatactgactagagcattgg 8938930  T
Q  197 agtactaacgtgcctgcaggtacctttctatccaccg--cgaagactcatcgccaccatacc 256  Q
    |||  ||||||||||||| | |||||||  || ||||  | |||||||||||||||| ||||    
T  8938929 agtgttaacgtgcctgcatgcacctttcgttctaccgcacaaagactcatcgccaccgtacc 8938868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 20025446 - 20025253
Alignment:
Q  50 ctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccac 149  Q
    |||||||||| || ||||| |||||   |||||||| ||  |||||||| |||||||||| | | |||||| |||||||| ||| |||||||| ||| ||    
T  20025446 ctaatcacacaccacaaaacccggagacggttattctcac-gcgcgcctgtataagggtgacctagcttcaccctcaaggaatgattcactttacacaac 20025348  T
Q  150 actttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcat 244  Q
    ||||||||||||||||||||||||| |||   ||||   |||||||||||  |||||||  |||||  |||||||   |||||||||||||||||    
T  20025347 actttctacacactctttctcagtttcattcctgacagtagcgttggagtgttaacgtgtgtgcagacacctttcgtcccaccgcgaagactcat 20025253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 22865963 - 22865735
Alignment:
Q  11 tcgcgcgaggatccccctacacgtgtcct-ctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtg 109  Q
    |||||| |||||| ||||||||||||| | ||  | ||| ||||||||| | |||| |||||||||  ||||||  |||| || ||||||||||||||||    
T  22865963 tcgcgcaaggatcaccctacacgtgtcatgct--ccgtccctaatcacaagtcgcataatccggaaacggttatggccaacgcacgcctatataagggtg 22865866  T
Q  110 gcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgc 209  Q
       |||||||| ||||||||||    ||||||||||| ||| ||  |||||||| |||||||||||||| | | ||||||||||   ||| ||||||| |    
T  22865865 aacttgcttcaccctcaaggtacacatcacttttcacaacatttcttacacactttttctcagttccattactaacttgagcgtcaaagtgctaacgtac 22865766  T
Q  210 ctgcaggtacctttctatccaccgcgaagac 240  Q
    ||||| | |||||||  ||||| ||||||||    
T  22865765 ctgcatgcacctttcgttccactgcgaagac 22865735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 24647411 - 24647303
Alignment:
Q  91 gcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgag 190  Q
    |||||||||||||||||||   |||||||| ||| |||||||   ||||||||||| ||||||  |||||||||||| |||||||||| | ||| |||||    
T  24647411 gcgcgcctatataagggtgaacttgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttccattactgaattgag 24647312  T
Q  191 cgttggagt 199  Q
    |||||||||    
T  24647311 cgttggagt 24647303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 4477230 - 4477155
Alignment:
Q  182 tgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccataccg 257  Q
    ||||||||||||||||||| |||||||||||| || ||| |||   ||||||| |||||||||||||||| |||||    
T  4477230 tgacttgagcgttggagtattaacgtgcctgcgggcacccttcgtcccaccgcaaagactcatcgccaccgtaccg 4477155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 19993182 - 19993285
Alignment:
Q  140 ttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaaga 239  Q
    ||||||| |||||||| |||| ||||||||||||||||| | |||||||||  ||||| | |||| ||| ||||| | |||||| |  ||||||||||||    
T  19993182 ttttcacaacactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtgtctgcaagaaccttttttcccaccgcgaaga 19993281  T
Q  240 ctca 243  Q
    ||||    
T  19993282 ctca 19993285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 26348127 - 26348190
Alignment:
Q  171 agttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgc 234  Q
    |||||||| |||||||||||||||||||| |||||||||||||||  |||||||  ||||||||    
T  26348127 agttccattaatgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgc 26348190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 16621264 - 16621173
Alignment:
Q  158 cacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcca 249  Q
    ||||||||||||||||||||  | || ||||||||||| |||  |||||||||| ||   |||||||  ||||||| |||||||||||||||    
T  16621264 cacactctttctcagttccaatattggcttgagcgttgaagtgttaacgtgcctacatacacctttcgttccaccgtgaagactcatcgcca 16621173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 34493610 - 34493567
Alignment:
Q  117 ttcatcctcaaggtatggttcacttttcaccacactttctacac 160  Q
    |||| |||||||||||| |||||||||||| |||||||||||||    
T  34493610 ttcaccctcaaggtatgattcacttttcacaacactttctacac 34493567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 68758 - 68891
Alignment:
Q  79 gttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccat 178  Q
    ||||||| ||| ||| ||||||||||||||| | |||||||  |||||||||||| |||||||||||| |||||||||  | ||||||||||||||||||    
T  68758 gttattctcaacgcgtgcctatataagggtgaccttgcttctccctcaaggtatgattcacttttcacaacactttct--atactctttctcagttccat 68855  T
Q  179 caatgacttgagcgttggagtactaacgtgcctgca 214  Q
     | | |||||||||||||||| |||||||| |||||    
T  68856 tactaacttgagcgttggagtgctaacgtgtctgca 68891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 273
Target Start/End: Original strand, 120938 - 121161
Alignment:
Q  50 ctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccac 149  Q
    |||||||||||  ||| ||| ||||| ||| |||   ||| |||||||||||||||||||   |||||||| ||||||||||    ||||||||||| ||    
T  120938 ctaatcacacgttgcataattcggaaatggctatgaacaaagcgcgcctatataagggtgaatttgcttcaccctcaaggtacacatcacttttcacaac 121037  T
Q  150 actttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcca 249  Q
    ||||| ||||||||||||||||||||||| | |||||| ||| |  |||||||||||||  |  ||| |||||||  |||||||| |||  |||| ||||    
T  121038 actttatacacactctttctcagttccattactgacttaagcatcagagtactaacgtgtttctaggcacctttcattccaccgcaaagcttcattgcca 121137  T
Q  250 ccataccgaaaatcattgtcgtca 273  Q
    || |||||||| || |||||||||    
T  121138 ccgtaccgaaagtcgttgtcgtca 121161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 246
Target Start/End: Complemental strand, 379879 - 379684
Alignment:
Q  51 taatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccaca 150  Q
    ||||||||||||||| ||| | ||  |||||||  ||||   ||||||||||| |||||   |||||||| ||||||||||    ||||||||||| |||    
T  379879 taatcacacgccgcataattcagagatggttatgaccaacatgcgcctatatacgggtgaacttgcttcaccctcaaggtacacatcacttttcacaaca 379780  T
Q  151 ctttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcg 246  Q
    |||  ||||||||||||||||||||||| | |||||| || ||   ||| |||||||||||  | | |||||||  ||||||||||||||||||||    
T  379779 cttcttacacactctttctcagttccattactgacttcagtgtcaaagtgctaacgtgcctagatgcacctttcgttccaccgcgaagactcatcg 379684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 15403 - 15515
Alignment:
Q  96 cctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttg 195  Q
    ||||||||||||||   |||||||| |||||||||||| |||||||||||| |||||||||| | |||||||||||||||||| | ||||| |||||| |    
T  15403 cctatataagggtgaacttgcttcaccctcaaggtatgattcacttttcacaacactttctagatactctttctcagttccattactgactggagcgtcg 15502  T
Q  196 gagtactaacgtg 208  Q
    |||| ||||||||    
T  15503 gagtgctaacgtg 15515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 8486 - 8663
Alignment:
Q  28 tacacgtgtcctctaactgtctctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaa 127  Q
    |||||||||| ||||||  |||||||||| |||| ||| || |||||   |||||| | ||| |||||||||||||||||||   ||    || ||| ||    
T  8486 tacacgtgtcatctaaccttctctaatcaaacgctgcataacccggagacggttatgctcaacgcgcgcctatataagggtgaagtt----cacccttaa 8581  T
Q  128 ggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgc 209  Q
    |||||| |||||||||||| |||||||||||||||| ||| |||||| ||| | |||||||||||| | ||| |||||||||    
T  8582 ggtatgattcacttttcacaacactttctacacactgtttttcagtttcattactgacttgagcgtcgaagtgctaacgtgc 8663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 6419 - 6298
Alignment:
Q  93 gcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcg 192  Q
    |||||||||||||| ||   ||||||||  ||||||||| |  ||||||||||| |||||||||||||||| |||||||||||||| | ||||||||||     
T  6419 gcgcctatataaggatgaacttgcttcacgctcaaggtacgactcacttttcacaacactttctacacactatttctcagttccattactgacttgagct 6320  T
Q  193 ttggagtactaacgtgcctgca 214  Q
    | | ||| ||||||||||||||    
T  6319 tcgaagtgctaacgtgcctgca 6298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 40916 - 40796
Alignment:
Q  94 cgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgt 193  Q
    |||||||| |||||||   |||||||| ||||||||||    ||||||||||  |||||| |||||| |||| | |||||||||||| ||||||||||||    
T  40916 cgcctataaaagggtgaacttgcttcaccctcaaggtacacatcacttttcataacacttcctacactctctctttcagttccatcactgacttgagcgt 40817  T
Q  194 tggagtactaacgtgcctgca 214  Q
    |||||| ||||||||||||||    
T  40816 tggagtgctaacgtgcctgca 40796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 10879 - 11006
Alignment:
Q  87 caatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgact 186  Q
    ||||||||| |||||||| ||||   ||| |||| ||||||||||    ||||||||||| ||||||  |||||||||| | |||||||||| | |||||    
T  10879 caatgcgcgtctatataaaggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactctctttcagttccattattgact 10978  T
Q  187 tgagcgttggagtactaacgtgcctgca 214  Q
    ||||||||||||| ||||||||||||||    
T  10979 tgagcgttggagtgctaacgtgcctgca 11006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 248
Target Start/End: Complemental strand, 23014 - 22852
Alignment:
Q  86 ccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgac 185  Q
    |||| |||| |||| |||||||||   |||||||| ||||||||||    ||||||||||| ||||||  |||||||  |||||||||||||| | ||||    
T  23014 ccaacgcgcacctacataagggtgaacttgcttcaccctcaaggtacacgtcacttttcacaacacttcttacacacgatttctcagttccattactgac 22915  T
Q  186 ttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgcc 248  Q
    ||||||||  |||| |||||||||| ||||| |||||||   |||| |||||||| |||||||    
T  22914 ttgagcgtcagagtgctaacgtgcccgcaggcacctttcgtcccactgcgaagacccatcgcc 22852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 205 - 326
Alignment:
Q  86 ccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggt-tcacttttcaccacactttctacacactctttctcagttccatcaatga 184  Q
    |||| ||||||||| |||||||||   |||||||| ||||||||||   | ||||||||||| ||||||  ||||||||||||||||||||||| | |||    
T  205 ccaacgcgcgcctagataagggtgaacttgcttcaccctcaaggtacattctcacttttcacaacacttcttacacactctttctcagttccattactga 304  T
Q  185 cttgagcgttggagtactaacg 206  Q
    ||||||||| ||||| ||||||    
T  305 cttgagcgtcggagtgctaacg 326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 69197 - 69324
Alignment:
Q  94 cgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgt 193  Q
    |||||||||||||||| ||| |||||| || || |||||| |||| ||||| |||||||||  ||||| ||  ||||| ||||  || ||||||||||||    
T  69197 cgcctatataagggtgacatagcttcagcc-cagggtatgattcaattttc-ccacacttttcacacattccatctcatttcctacactgacttgagcgt 69294  T
Q  194 tggagtactaacgtgcctgcaggtaccttt 223  Q
    |||||| |||||||||||||||| ||||||    
T  69295 tggagtgctaacgtgcctgcaggcaccttt 69324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 245
Target Start/End: Original strand, 29290 - 29398
Alignment:
Q  135 ttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgc 234  Q
    |||||||||||| |||||||||||||  |||| || | || ||| | |||||||||||||||||| ||||| || || || | |||||||  ||||||||    
T  29290 ttcacttttcacaacactttctacac--tcttccttattttcattactgacttgagcgttggagtgctaacatgactccatgcacctttcgttccaccgc 29387  T
Q  235 gaagactcatc 245  Q
    |||||||||||    
T  29388 gaagactcatc 29398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 24815 - 24867
Alignment:
Q  81 tattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatg 133  Q
    ||||||||| |||||||||||||||| || |||||||||| ||||||||||||    
T  24815 tattcccaacgcgcgcctatataaggttgacattgcttcaacctcaaggtatg 24867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 35327 - 35253
Alignment:
Q  140 ttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgca 214  Q
    ||||||| |||||||| |||||||||||||||||||| | | ||||||||| ||  |||| ||||||||||||||    
T  35327 ttttcacaacactttccacacactctttctcagttccgttactgacttgagtgtcagagtgctaacgtgcctgca 35253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 215349 - 215271
Alignment:
Q  137 cacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcag 215  Q
    |||||||||| ||||||  |||||||||| | |||||| ||| | |||||||||||||||| | |||||||||||||||    
T  215349 cacttttcacaacacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcag 215271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 4396 - 4525
Alignment:
Q  95 gcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgtt 194  Q
    |||||||||||||||   |||||||| ||||||||||    ||| ||||||  ||||||  ||||| |||| | |||||| ||| | |||||||||||||    
T  4396 gcctatataagggtgaacttgcttcaccctcaaggtacacatcatttttcataacacttcttacactctctctttcagtttcattagtgacttgagcgtt 4495  T
Q  195 ggagtactaacgtgcctgcaggtacctttc 224  Q
    ||||| ||||||||| |||||  |||||||    
T  4496 ggagtgctaacgtgcttgcagacacctttc 4525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 6787 - 6983
Alignment:
Q  50 ctaatcacacgccgcaaaatccggaattggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccac 149  Q
    |||||||||||||||| || | |||   ||||||  |||| | ||||||||| |||||||   ||| |||| ||||||||||    ||||||||||| ||    
T  6787 ctaatcacacgccgcataacctggagacggttatggccaacgtgcgcctatacaagggtgaacttgtttcaccctcaaggtacacatcacttttcacaac 6886  T
Q  150 actttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcg 246  Q
    ||||  ||||||||| ||||||||| ||  | ||||||||||||  |||  ||||||||||| |  | | |||||  |||||| |||||||||||||    
T  6887 acttcttacacactcgttctcagtttcaatactgacttgagcgtcagagacctaacgtgcctaccagcatctttcgttccaccacgaagactcatcg 6983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 20510 - 20618
Alignment:
Q  136 tcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcg 235  Q
    ||||||||||  ||| ||||||||||||||||||||||||| | | ||||||||||||  |||| ||||| ||  || | | |||||||  |||||||||    
T  20510 tcacttttcataacattttctacacactctttctcagttcctttagtgacttgagcgtcagagtgctaacatgtttgtaagcacctttcgttccaccgcg 20609  T
Q  236 aagactcat 244  Q
    ||| |||||    
T  20610 aagcctcat 20618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 10756 - 10840
Alignment:
Q  161 actctttctcagttccatcaatgacttgagcgttggagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatc 245  Q
    |||||||||||||||||| | |||||||| ||| ||||| ||||| ||||| |||  |||||||  |||||| ||||||||||||    
T  10756 actctttctcagttccattactgacttgaacgtcggagtgctaacatgcctacagacacctttcattccaccacgaagactcatc 10840  T

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Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 73757 - 73891
Alignment:
Q  78 ggttattcccaatgcgcgcctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttcca 177  Q
    |||||| |||||  ||||||||||||  ||||   |||||||| ||| |||||||| || ||||||||| ||||||||||| |||||||| |||  ||||    
T  73757 ggttatacccaacacgcgcctatatattggtgaacttgcttcaccctgaaggtatgatttacttttcacaacactttctacgcactctttttcaaatcca 73856  T
Q  178 tcaatgacttgagcgttggagtactaacgtgcctg 212  Q
    | | | | ||||||||  |||| ||||| ||||||    
T  73857 ttactaatttgagcgtcagagtgctaacatgcctg 73891  T

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Target: scaffold0034 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 257
Target Start/End: Original strand, 18444 - 18604
Alignment:
Q  96 cctatataagggtggcattgcttcatcctcaaggtatggttcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttg 195  Q
    |||||||||||||| | | |||||| ||  |||||||| |||| ||||  | ||||||| ||||||||| |||| | | ||   | ||||||||| ||||    
T  18444 cctatataagggtgacttagcttcaacccgaaggtatgattcatttttt-ctacactttgtacacactccttcttattccctatactgacttgagtgttg 18542  T
Q  196 gagtactaacgtgcctgcaggtacctttctatccaccgcgaagactcatcgccaccataccg 257  Q
    |||| |||| ||| ||||||| || ||||  | ||||| ||||||||||||||||| |||||    
T  18543 gagtgctaaagtgtctgcaggaacatttcgtttcaccgtgaagactcatcgccaccgtaccg 18604  T

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Target: scaffold0464 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 11591 - 11525
Alignment:
Q  136 tcacttttcaccacactttctacacactctttctcagttccatcaatgacttgagcgttggagtactaac 205  Q
    ||||||||||| ||||||   | |||||||||||||||||||| |||||  ||||||||||||| |||||    
T  11591 tcacttttcacaacactt---atacactctttctcagttccattaatgaggtgagcgttggagtgctaac 11525  T

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