View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_38 (Length: 287)
Name: NF14728_low_38
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 7902820 - 7903056
Alignment:
| Q |
20 |
tagcagccctcaggaggtgcaaacaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctcccacagaaat |
119 |
Q |
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| T |
7902820 |
tagctgccctcaggaggtgcaaccaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctcccacagaaat |
7902919 |
T |
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| Q |
120 |
accaaagttttctattatttgagtacaggataatggtcatatgtcttgagttctgatttgcatgactttacttatgttgatactggtgtccactttgtac |
219 |
Q |
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| T |
7902920 |
accaaagttttctattatttgagtacaggataatggtcatatgtc-tgagttctgatttgcatgactttacttatgttaatactggcgtgcactttgtac |
7903018 |
T |
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| Q |
220 |
ttatcatttcaaaaactttgatcagacttggttaccaaa |
258 |
Q |
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| T |
7903019 |
ttgtcatttc-gaaactttgatcagacttggttaccaaa |
7903056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 7913236 - 7913366
Alignment:
| Q |
19 |
ctagcagccctcaggaggtgcaaacaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctc-----ccac |
113 |
Q |
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| T |
7913236 |
ctagcagccctcaggaggtgcaaccaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctctgctcctac |
7913335 |
T |
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| Q |
114 |
agaaataccaaagttttctattatttgagta |
144 |
Q |
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| T |
7913336 |
aaaaatacccaagttttctattatttgagta |
7913366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 7913384 - 7913498
Alignment:
| Q |
138 |
ttgagtacaggataatggtcatatgtcttgagttctgatttgcatgactttacttatgttgatactggtgtccactttgtacttatcatttcaaaaactt |
237 |
Q |
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| T |
7913384 |
ttgaatacaggataatgatcatatgtcc-gagttctgatttgcatgactttacttatgttaatactggtgtgcactttgtacttgtcatttc-gaaactt |
7913481 |
T |
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| Q |
238 |
tgatcagacttggttac |
254 |
Q |
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| T |
7913482 |
tgatcagacttggttac |
7913498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 7896373 - 7896435
Alignment:
| Q |
46 |
atgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgct |
108 |
Q |
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| T |
7896373 |
atgaagcttgatggaaagacattgcaaattgagcttgttggaacaagtttggttactcctgct |
7896435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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