View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_4 (Length: 593)
Name: NF14728_low_4
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 15 - 566
Target Start/End: Complemental strand, 39991548 - 39990997
Alignment:
| Q |
15 |
atgcaggaccgtttatattcacagggaggattaaaggtactgagtttatgatatattttgtcattttgtaacattattaatgtctagtgagtagtcattt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39991548 |
atgcaggaccgtttatattcacagggaggattaaaggtaccgagtttatgatatattttgtcattttgtaacattattaatgtctagtgagtagtcattt |
39991449 |
T |
|
| Q |
115 |
gaggctaatttgatttctcatttcaatgaaatttcaggctgaaggtatattccgcataaacccggaaaatagtaaggaggagcatgtgaggaaccagttg |
214 |
Q |
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| T |
39991448 |
gaggctaatttgatttctcatttcaatgaaatttcaggctgaaggtatattccgcataaacccggaaaatagtaaggaggagcatgtgaggaaccagttg |
39991349 |
T |
|
| Q |
215 |
aatagtggaattgtgccagatgacattgatgtccactgcttggcgggactaatcaaagcgtggttccgagagcttccttcgggagtactagatggacttt |
314 |
Q |
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| T |
39991348 |
aatagtggaattgtgccagatgacattgatgtccactgcttggcgggactaatcaaagcgtggttccgagagcttccttcgggagtactagatggacttt |
39991249 |
T |
|
| Q |
315 |
cccctgagcaagttcttgagtgcaacacagaagaagaatctattgagcttgtgaagcagctaaaaccaactgagtctgccttgctcagttgggctattga |
414 |
Q |
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| T |
39991248 |
cccctgagcaagttcttgagtgcaacacagaagaagaatctattgagcttgtgaagcagctaaaaccaactgagtctgccttactcagttgggctattga |
39991149 |
T |
|
| Q |
415 |
tctcatggctgatgttgtccaagaggaggagtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactcaggtaattagtaaa |
514 |
Q |
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| T |
39991148 |
tctcatggctgatgttgtccaagaggaggagtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactcaggtaattagtaaa |
39991049 |
T |
|
| Q |
515 |
agtatgcataccctttgtttaatgttcacattttcctattatgttatcctaa |
566 |
Q |
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| T |
39991048 |
agtatgcataccctttgtttaatgttcacattttcctattatgttatcctaa |
39990997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 139 - 505
Target Start/End: Original strand, 43876375 - 43876741
Alignment:
| Q |
139 |
aatgaaatttcaggctgaaggtatattccgcataaacccggaaaatagtaaggaggagcatgtgaggaaccagttgaatagtggaattgtgccagatgac |
238 |
Q |
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| T |
43876375 |
aatgaattttcaggctgaaggaatatttcgtataaatccagaaaatggcgaagaggaacatttgagggagcaattgaatagtggcattgtgccaaatgac |
43876474 |
T |
|
| Q |
239 |
attgatgtccactgcttggcgggactaatcaaagcgtggttccgagagcttccttcgggagtactagatggactttcccctgagcaagttcttgagtgca |
338 |
Q |
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| T |
43876475 |
attgatgttcattgcttggctggcttaattaaagcatggtttagggaacttccttcaggagtgttagatggactttcacctgaggaagttcttgaatgca |
43876574 |
T |
|
| Q |
339 |
acacagaagaagaatctattgagcttgtgaagcagctaaaaccaactgagtctgccttgctcagttgggctattgatctcatggctgatgttgtccaaga |
438 |
Q |
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| T |
43876575 |
acactgaagaagaatctgttgagcttgtgaagcagctgaaaccagttgaatcagctttgcttaattgggctgttgatcttatggctgatgttgtagttga |
43876674 |
T |
|
| Q |
439 |
ggaggagtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactcaggta |
505 |
Q |
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| T |
43876675 |
agaggagtgtaacaaaatggatgctagaaatattgctatggtttttgctccaaatatgactcaggta |
43876741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 215 - 505
Target Start/End: Original strand, 31296054 - 31296344
Alignment:
| Q |
215 |
aatagtggaattgtgccagatgacattgatgtccactgcttggcgggactaatcaaagcgtggttccgagagcttccttcgggagtactagatggacttt |
314 |
Q |
| |
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|||||||| ||||||||| |||||||||||| || |||||||| || |||| ||||| ||||| | || |||||||| ||||| |||||||||||| |
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| T |
31296054 |
aatagtggcattgtgccaattgacattgatgtacattgcttggctggcttaattaaagcatggtttagggaacttccttcaggagtgttagatggacttt |
31296153 |
T |
|
| Q |
315 |
cccctgagcaagttcttgagtgcaacacagaagaagaatctattgagcttgtgaagcagctaaaaccaactgagtctgccttgctcagttgggctattga |
414 |
Q |
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| T |
31296154 |
cacctgaggaagttcttgaatgcaacactgaagaagaatttgttgagcttgtgaagctgctgaaaccagttgaatcagctttgcttaattgggctgttga |
31296253 |
T |
|
| Q |
415 |
tctcatggctgatgttgtccaagaggaggagtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactcaggta |
505 |
Q |
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||| |||||||||||||| || ||||||| ||||||| ||||||| | ||| ||||| ||||||||||||||||| |||||||||||| |
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| T |
31296254 |
tcttatggctgatgttgtagttgaagaggagtataacaaattgaatgctataaatattgctatggtttttgctccaaatatgactcaggta |
31296344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 414 - 500
Target Start/End: Original strand, 19177365 - 19177451
Alignment:
| Q |
414 |
atctcatggctgatgttgtccaagaggaggagtttaacaaaatgaatgcaagaaacattgccatggtttttgctccaaacatgactc |
500 |
Q |
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|||| |||||||||||||| ||||||||| | | || || ||||||||| | |||||||||||||||||||| ||||||||||||| |
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| T |
19177365 |
atctgatggctgatgttgtacaagaggagcatctgaataagatgaatgcacgcaacattgccatggtttttgcaccaaacatgactc |
19177451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 36407694 - 36407731
Alignment:
| Q |
467 |
aacattgccatggtttttgctccaaacatgactcaggt |
504 |
Q |
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| T |
36407694 |
aacattgccatggttttcgcaccaaacatgactcaggt |
36407731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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