View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_48 (Length: 251)
Name: NF14728_low_48
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 35475811 - 35475582
Alignment:
| Q |
6 |
gacatcatcacaaccattttgagttcaaatatgggaacgtgagggggacaaataaagcagcagtataataaatataagaatatatcatgaaaggaatttt |
105 |
Q |
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| T |
35475811 |
gacatcatcacaaccattgtgagttcaaatatgggaacgtgagggggacaaataaagcagtagtataataaatataagaatatatcatgaaaggaatttt |
35475712 |
T |
|
| Q |
106 |
ttacatttttaggatgaggataataagtttcnnnnnnnnnnnnnnnnngagagggataataagttggtatcgtattnnnnnnnnntgtattcagtattac |
205 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35475711 |
ttacatttttaggatgaggataataagtttcttttgttttttttttttgagagggataataagttggtatcgtattaaaaaaaaatgtattcagtattac |
35475612 |
T |
|
| Q |
206 |
tattgccataaatatagagtaagtaagaag |
235 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35475611 |
tattgccataaatatagagtaagtaagaag |
35475582 |
T |
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