View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14728_low_53 (Length: 238)
Name: NF14728_low_53
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_53 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 39165026 - 39165234
Alignment:
| Q |
18 |
ctaaaagtgtctgatatgattcaacaaaaggctgtgaagaagatatctccaaatctgaattcaattgtaacaatctattcttataatagtattcatgaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39165026 |
ctaaaagtgtctgatatgattcaacaaaaggctgtgaagaagatatctccaaatctgaattcaattgtaacaatctattcttataatagtattcatgaaa |
39165125 |
T |
|
| Q |
118 |
ttgatctaggatacccatacaactatgaatatgacaagcacggtaaagcggcgtgagatcaaattgcattgcagaatcgtcgtcagcctcttcaacatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39165126 |
ttgatctaggatacccatacaactatgaatatgacaagcacggtaaagcggcgtgagatcaaattgcattgcagaatcgtcgtcagcctcttcaacatct |
39165225 |
T |
|
| Q |
218 |
aaattatat |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
39165226 |
aaattatat |
39165234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 19510290 - 19510130
Alignment:
| Q |
20 |
aaaagtgtctgatatgattcaacaaaaggctgtgaagaagatatctccaaatctgaattcaattgtaacaatctattcttataatagtattcatgaaatt |
119 |
Q |
| |
|
|||| |||||| || |||||||||||||| |||| |||||||| || | || ||||||| |||||||||||| || |||| ||||||||| |||| | |
|
|
| T |
19510290 |
aaaaatgtctggtaagattcaacaaaaggttgtgctgaagatatttcaaggtcggaattcagttgtaacaatctgttagtatagtagtattcacgaaact |
19510191 |
T |
|
| Q |
120 |
gatctaggatacccatacaactatgaatatgacaagcacggtaaagcggcgtgagatcaaa |
180 |
Q |
| |
|
||| |||| || | | || |||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
19510190 |
tctctcggattcctagaaaatcatgaatatgacaagcacgataaagaggtgtgagatcaaa |
19510130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University