View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_57 (Length: 229)
Name: NF14728_low_57
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 27666765 - 27666957
Alignment:
| Q |
18 |
aggaaaaaccaccagaatgctaaccagcaagaattgtcagcctattcttttcacagctgcattgaatgagacatgaaccagaagatattatcagcaatga |
117 |
Q |
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| T |
27666765 |
aggaaaaaccaccagaatgctaaccagcaagaattgtcagcctattcttttcacagctgcattgaatgagacatgaaccagaagatattataagcaatga |
27666864 |
T |
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| Q |
118 |
aagctgaaggaccacaacatccatctacaccatcaagggcacatttcagcaacccaattttgcgcatttcatcccacttggcccaggactatc |
210 |
Q |
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| T |
27666865 |
tagctgaaggaccacagcatccatctacaccatcaagggcacatttcagcaacccaattttgcgcatttcatcccacttggcccaggactatc |
27666957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 27672122 - 27672281
Alignment:
| Q |
18 |
aggaaaaaccaccagaatgctaaccagcaagaattgtcagcctattctttt----cacagctgcattgaatgagacatgaaccagaagatattatcagca |
113 |
Q |
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| T |
27672122 |
aggaaaacccaccagaatgctaaccagcaagaattgttagcctattctttctttccatagctgcattgaatgagacatgtactggaatatattatcagca |
27672221 |
T |
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| Q |
114 |
atgaa-agctgaaggaccacaacatccatctacaccatcaagggcacatttcagcaaccc |
172 |
Q |
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| T |
27672222 |
atcaatagctggaggaccacaacattcatatacaccatcaaggacacatttcagcgaccc |
27672281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 227248 - 227309
Alignment:
| Q |
20 |
gaaaaaccaccagaatgctaaccagcaagaattgtcagcctattcttttcacagctgcattga |
82 |
Q |
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| T |
227248 |
gaaaaatcaccagaatgctagccagcaataattgtcagcctattc-tttcatagctgcattga |
227309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 703661 - 703722
Alignment:
| Q |
20 |
gaaaaaccaccagaatgctaaccagcaagaattgtcagcctattcttttcacagctgcattga |
82 |
Q |
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| T |
703661 |
gaaaaatcaccagaatgctagccagcaataattgtcagcctattc-tttcatagctgcattga |
703722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 740871 - 740932
Alignment:
| Q |
20 |
gaaaaaccaccagaatgctaaccagcaagaattgtcagcctattcttttcacagctgcattga |
82 |
Q |
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| T |
740871 |
gaaaaatcaccagaatgctagccagcaataattgtcagcctattc-tttcatagctgcattga |
740932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 864766 - 864827
Alignment:
| Q |
20 |
gaaaaaccaccagaatgctaaccagcaagaattgtcagcctattcttttcacagctgcattga |
82 |
Q |
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|||||| ||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||||| |
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| T |
864766 |
gaaaaatcaccagaatgctagccagcaataattgtcagcctattc-tttcatagctgcattga |
864827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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