View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_6 (Length: 505)
Name: NF14728_low_6
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 317 - 488
Target Start/End: Original strand, 39386463 - 39386638
Alignment:
| Q |
317 |
ccctttctattctcccgcattttccctaatcttttttaccgtac----ttagtcgtcctttagaactgtgagggtcgaggacatgtatctgaattgtttg |
412 |
Q |
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| T |
39386463 |
ccctttctattctcccgcattttccctaatcttttttaccgtacatgattagtcgtcctttagaactgtgagggtcga---catgtatctgaattgtttg |
39386559 |
T |
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| Q |
413 |
aaaacattgggtacattattgacat---ttgttaagtnnnnnnnngagattacgcaacaagtgatatgttcgatattgt |
488 |
Q |
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| T |
39386560 |
aaaacattgggtacattattgacatttgttgttaagtaaaaaaaagagattacgcaacaagtgatatgtccgatattgt |
39386638 |
T |
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Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 39386160 - 39386390
Alignment:
| Q |
1 |
ataatataataatgctagtaaatgtctcgtatattacattctagttctctcttgtgtttaaatatacnnnnnnnnnnttgttacgaggacaatcaaacaa |
100 |
Q |
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| T |
39386160 |
ataatataataatgatagtaaatctctcatatattacattctagttctctcttgtgtttaaatatac-aaaaaaaaattgttacgaggacaatcaaacaa |
39386258 |
T |
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| Q |
101 |
taaccgaaacaaaatatactctctt-nnnnnnnnggattggtcatatcattcttaagaagattgaggatgtcatttgaaaaagaagcatgaatgagaagg |
199 |
Q |
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| T |
39386259 |
taaccgaaataaaatatactctcttaaaaaaaaatggttggtcgtatcattcttaagaagattgatgatgttatttgaaaa-------------agaagg |
39386345 |
T |
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| Q |
200 |
tatgtattctcaaaagttaattcatttaacttaatattgttggac |
244 |
Q |
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| T |
39386346 |
tatgtattctcaaaagttaattcatttaacttaatattgttggac |
39386390 |
T |
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