View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_63 (Length: 219)
Name: NF14728_low_63
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 27223291 - 27223472
Alignment:
| Q |
7 |
tagataatacttttagagaaatagcaaaaagtcattttgagatcaaattgatcgttcttaaaattaagatcataaaggaattgtgtattcaattgcaaag |
106 |
Q |
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| T |
27223291 |
tagattatacttatagagaaatagcgaaaaatcattttgagatcaaattgatcattgttaaaatctagatcataaaggaattgtgtattcagttgcaaag |
27223390 |
T |
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| Q |
107 |
c-tcactaatcttatttacgctataaaggtggactgtgtggtatctaaagtttaaagaggttgtccaaaacatgtacggtca |
187 |
Q |
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| T |
27223391 |
cttcactaatcttatttacgctataaaggtggattgtgtggtatctaaagtctaaagaggttgtctaaaacttgtacggtca |
27223472 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 8321615 - 8321554
Alignment:
| Q |
127 |
tataaaggtggactgtgtggtatctaaagtttaaagaggttgtccaaaacatgtacggtcaa |
188 |
Q |
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| T |
8321615 |
tataaaggtggattgtatgatagctaaagtctaaagaggttgtccaaaacttgtaaggtcaa |
8321554 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 21806629 - 21806716
Alignment:
| Q |
90 |
tgtattcaattgcaaagctc-actaatcttatttacgctataaaggtggactgtgtggtatctaaagtttaaagaggttgtccaaaac |
176 |
Q |
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| T |
21806629 |
tgtattcaattgtaaagctttagtaatcttctttagggtataaaggtggatcgtgtggtagctaaagtttgaagagactgtccaaaac |
21806716 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 21506249 - 21506197
Alignment:
| Q |
129 |
taaaggtggactgtgtggtatctaaagtttaaagaggttgtccaaaacatgta |
181 |
Q |
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| T |
21506249 |
taaaggtggattgtgtggttgcaaaagtctaaagaggttgtgcaaaacatgta |
21506197 |
T |
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