View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_65 (Length: 206)
Name: NF14728_low_65
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 5083956 - 5084150
Alignment:
| Q |
1 |
aattgtaccttcaaggtacatattactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa |
100 |
Q |
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| T |
5083956 |
aattgtaccttcaaggtccatgttactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa |
5084055 |
T |
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| Q |
101 |
gaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcggtggt |
195 |
Q |
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| T |
5084056 |
gaagtagaagaggaaattgaccaatttctaagcatatgataaggatctaaggtaattgaggatttgaatgcaagaagtgaaaattcatctgtggt |
5084150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 5111115 - 5110921
Alignment:
| Q |
1 |
aattgtaccttcaaggtacatattactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa |
100 |
Q |
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| T |
5111115 |
aattgtaccttcaaggtccatgttattaagatccaatgcattcactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa |
5111016 |
T |
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| Q |
101 |
gaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcggtggt |
195 |
Q |
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| T |
5111015 |
gaagtagaagaggaaattgaccaattactaagaatatcataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatctgtggt |
5110921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 5094112 - 5093921
Alignment:
| Q |
1 |
aattgtaccttcaaggtacatattactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaa |
100 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5094112 |
aattgtaccttcaaggcccatgctactaagattcaatgcatttactcttccatggtgttcatcacaagtaacaccaacccaattgcatgaagacaaagaa |
5094013 |
T |
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| Q |
101 |
gaagtagaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcggt |
192 |
Q |
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| T |
5094012 |
gaagtagaagaggaaattgaccaattactaagaatatcataagggtctaaggttattgaggatttgaatgcaagaagtgaaaattcatcggt |
5093921 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 14427743 - 14427934
Alignment:
| Q |
6 |
taccttcaaggtacatattactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagt |
105 |
Q |
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| T |
14427743 |
taccttcaaggcccatgttactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagc |
14427842 |
T |
|
| Q |
106 |
agaagaggaaattgaccaattactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatcggtggtta |
197 |
Q |
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| T |
14427843 |
agaagtggaaattgaccaattactaagaatatgataaggatctaaggtaattgaggatttgaatgcaagaagtgaaaattcatcggtggtta |
14427934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 16872553 - 16872370
Alignment:
| Q |
6 |
taccttcaaggtacatattactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagt |
105 |
Q |
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| T |
16872553 |
taccttcaagtcccatattactaagattcaatgcctttactcttccatgatgctcatcacaagtgacaccaacccaattacatgatgaga---aagaagt |
16872457 |
T |
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| Q |
106 |
agaagaggaaattgacca---attactaagcatatgataagggtctaaggtaattgatgatttgaatgcaagaagtgaaaattcatc |
189 |
Q |
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||||||||| |||||||| |||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
16872456 |
agaagaggagattgaccaattattactaagcttgtgataagggtctaaggtaatagaggatttgaatgcaagaagtgaaaattcatc |
16872370 |
T |
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