View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14728_low_8 (Length: 483)
Name: NF14728_low_8
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 38892139 - 38891683
Alignment:
| Q |
18 |
gatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaaagtgtgtgtgagattacttcggcaattgaacaattttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38892139 |
gatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaaagtgtgtgtgagattacttcggcaattgaacaattttc |
38892040 |
T |
|
| Q |
118 |
aatcaacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctttatggtg |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38892039 |
aatcaacatggaagctgcaccataagttttcaaactaattttcgacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctttatggtg |
38891940 |
T |
|
| Q |
218 |
gattatgatagttttttgaatgatgattgccggtgacggcaatgacagtatatgtaccattttcaatggagatgaagattgttggtattagttgaaaaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38891939 |
gattatgatagttttttgaatgatgattgccggtgacggcaatgacaatatatgtaccattttcaatggagatgaagattgttggtgttagttgaaaaat |
38891840 |
T |
|
| Q |
318 |
atatgttgaagaagtctcacattac---gtattataaaggaaaaggaaggttgggac--tatatatatggactataattttttgttatatgacacactag |
412 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38891839 |
atatgttgaagaagtctcacattacctagtattataaaggaaaagggaggttgggactatatatatatggactataattttttgttatatgacacactag |
38891740 |
T |
|
| Q |
413 |
ccaaaaacacattaaacttctatggaactttttcttttcttttctcttgtacctttg |
469 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38891739 |
ccaaaaacacattaaacttgtatggaattttttcttttcttttctcttgtacctttg |
38891683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 246
Target Start/End: Complemental strand, 34981268 - 34981081
Alignment:
| Q |
60 |
attgattgaaattgatgcaaagtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcatcataagttttcaaactaatttt |
159 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| || | ||||| | ||||||| ||| ||||||| |||| ||||||||| | | ||||| |
|
|
| T |
34981268 |
attgattgacattgatgcaaagtgtgtttgagattatgtcagtggttgaagagttttcaaccaatatggaagttgcacgataagtttttagcatgatttt |
34981169 |
T |
|
| Q |
160 |
caacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctttatggtggattatgatagtt-ttttgaatgatgattg |
246 |
Q |
| |
|
|||||||||| || ||||||||||||| ||| ||| || |||| | |||||| |||| |||||||||| ||||||| ||||||| |
|
|
| T |
34981168 |
tgacatgtgaaaattattggagtggtttaaattcgagtgaagtatattttttatgatggagtatgatagttcttttgaactatgattg |
34981081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 16388148 - 16388197
Alignment:
| Q |
177 |
tggagtggtttaacttcaagtaaaatatactctttatggtggattatgata |
227 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
16388148 |
tggagtggtttaacttcaagtgat-tatactctttatggtggagtatgata |
16388197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 2615244 - 2615158
Alignment:
| Q |
121 |
caacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaagtaaaatatact |
207 |
Q |
| |
|
||||||| ||| ||||| ||||||||||| | ||||||||||||| ||| ||| ||||||| |||||||||||||||| |||||| |
|
|
| T |
2615244 |
caacatgaaagttgcattataagttttcagccggattttcaacatgtaaaaattcttggagtgttttaacttcaagtaaagtatact |
2615158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 31795722 - 31795644
Alignment:
| Q |
18 |
gatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaaagtgtg-tgtgagatta |
95 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| | ||||| |||| |||||| ||||||||| |||||||||| |
|
|
| T |
31795722 |
gatacaatcaagattacacaaggtgttgattagtacacgcgcattggttgacattgatacaaagtgtgttgtgagatta |
31795644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 29392515 - 29392552
Alignment:
| Q |
183 |
ggtttaacttcaagtaaaatatactctttatggtggat |
220 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
29392515 |
ggtttaacttcaagtaaagtataccctttatggtggat |
29392552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 22189825 - 22189749
Alignment:
| Q |
120 |
tcaacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaag |
196 |
Q |
| |
|
|||||||||||| ||| | ||||||||||| || |||||| | |||||||| ||| || |||||||||||| |||| |
|
|
| T |
22189825 |
tcaacatggaagttgctccttaagttttcaacctcattttcgatatgtgaaaattcttgaagtggtttaactacaag |
22189749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 21932311 - 21932222
Alignment:
| Q |
121 |
caacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctt |
210 |
Q |
| |
|
||||||||||| |||| |||||||||||| | | |||| |||||||||||||| || | | ||| |||||||||| || ||||||||| |
|
|
| T |
21932311 |
caacatggaagttgcacaataagttttcaacttgaatttcgacatgtgaaagttcttgaaatagttcaacttcaagtgaagtatactctt |
21932222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University