View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14728_low_9 (Length: 482)
Name: NF14728_low_9
Description: NF14728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14728_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 463
Target Start/End: Complemental strand, 28629486 - 28629034
Alignment:
| Q |
14 |
attattctcacatccaaaaacaaaaccaccaccgacaacaacacttgataacaaaagaatcacatcaaagagtcactctctcacacacaca--tactgac |
111 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
28629486 |
attattctcacatccaaaaacaaaacaaccaccgacaacaacacttcataacaaaagaatcacaacaaagagtcactctctcacacacacacatactgac |
28629387 |
T |
|
| Q |
112 |
actgaaatcaatccagatacacattttttcttaactccaaaacaaactcttacatt-ctatttccaccacagaatctcacgaacaacccttttgaatccc |
210 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28629386 |
actgaaatcaatccagctacacattttttcttaactccaaaacaaactcttacatttctatttccaccacagaatctcacgaacaacccttttgaatccc |
28629287 |
T |
|
| Q |
211 |
ttaatcaataaccgattttgaaatcaatttcaatgacccaaatagcttattaatcagatccaccttcttcctcaaaatgcgtcactcaaatttcccacca |
310 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28629286 |
ttaatcaaaaaccgattttgaaatcaatttcaatgacccaaatagcttattaatcagatccaccttcttcctcaaaatgcgtcactcaaatttcccacca |
28629187 |
T |
|
| Q |
311 |
tggaaacgcaccaacacacgtcaatggcgtctcatcgacctcatttccattgcctttttctcattactctttctcttctttgttctcttttacaccaccc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28629186 |
tggaaacgcaccaacacacgtcaatggcgtctcatcgacctcatttccattgcctttttctcattactctttctcttctttgttctcttttacaccaccc |
28629087 |
T |
|
| Q |
411 |
ttggtcgcagccgtgtggtggctccgtccaccgttgatcctcaacagcgcaac |
463 |
Q |
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| T |
28629086 |
ttggtcgcagccgtgtggtggctccgtccaccgttgatccgcaacagcgcaac |
28629034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 162 - 386
Target Start/End: Complemental strand, 12385167 - 12384944
Alignment:
| Q |
162 |
tacattctatttccaccacagaatctcacgaacaacccttttgaatcccttaatcaataaccgattttgaaatcaatttcaatgacccaaatagcttatt |
261 |
Q |
| |
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|||||| |||||||| |||| |||| ||| |||||||||||| ||||| | |||||| |||||||||||||| ||| || | |||||||| ||||||| |
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| T |
12385167 |
tacattatatttccatcacataatcacacaaacaaccctttttaatcc-taaatcaaaaaccgattttgaaaccaaaatcgaatacccaaatggcttatt |
12385069 |
T |
|
| Q |
262 |
aatcagatccaccttcttcctcaaaatgcgtcactcaaatttcccaccatggaaacgcaccaacacacgtcaatggcgtctcatcgacctcatttccatt |
361 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
12385068 |
aatcagatccaccttcttcctcaaaatgggtcactcaaatttcccaccatggaaacacaccaacacacgtcaatggcgtcttatcaacctcatttccata |
12384969 |
T |
|
| Q |
362 |
gcctttttctcattactctttctct |
386 |
Q |
| |
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|| || ||||||||||||| ||||| |
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| T |
12384968 |
gctttcttctcattactctctctct |
12384944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 162 - 411
Target Start/End: Complemental strand, 14455892 - 14455644
Alignment:
| Q |
162 |
tacattctatttccaccacagaatctcacgaacaacccttttgaatcccttaatcaataaccgattttgaaatcaatttcaatgacccaaatagcttatt |
261 |
Q |
| |
|
|||||| |||||||| ||||||||| ||| |||||||||||| ||||| | |||||| |||||||||||||| ||| || | |||||||| ||||||| |
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| T |
14455892 |
tacattatatttccatcacagaatcacacaaacaaccctttttaatcc-taaatcaaaaaccgattttgaaaccaaaatcgaatacccaaatggcttatt |
14455794 |
T |
|
| Q |
262 |
aatcagatccaccttcttcctcaaaatgcgtcactcaaatttcccaccatggaaacgcaccaacacacgtcaatggcgtctcatcgacctcatttccatt |
361 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
14455793 |
aatcagacccaccttcttcctcaaaatgggtcactcaaatttcccacaatggaaacacaccaacacacgtcaatggcgtcttatcaacctcatttccata |
14455694 |
T |
|
| Q |
362 |
gcctttttctcattactctttctcttctttgttctcttttacaccaccct |
411 |
Q |
| |
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|| || ||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
14455693 |
gctttcttctcattactctctctcttctttgttctcttttacaacaccct |
14455644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 162 - 412
Target Start/End: Original strand, 18703597 - 18703846
Alignment:
| Q |
162 |
tacattctatttccaccacagaatctcacgaacaacccttttgaatcccttaatcaataaccgattttgaaatcaatttcaatgacccaaatagcttatt |
261 |
Q |
| |
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|||||| |||||||| ||||||||| ||| |||||||||||| ||||| | |||||| |||||||||||||| ||| || | |||||||| ||||||| |
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| T |
18703597 |
tacattatatttccatcacagaatcacacaaacaaccctttttaatcc-taaatcaaaaaccgattttgaaaccaaaatcgaatacccaaatggcttatt |
18703695 |
T |
|
| Q |
262 |
aatcagatccaccttcttcctcaaaatgcgtcactcaaatttcccaccatggaaacgcaccaacacacgtcaatggcgtctcatcgacctcatttccatt |
361 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| | ||||||||||| |
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| T |
18703696 |
aatcagaaccaccttcttcctcaaaatgggtcactcaaatttcccaccatggaaagacaccaacacacatcaatggcgtcttatcaaactcatttccata |
18703795 |
T |
|
| Q |
362 |
gcctttttctcattactctttctcttctttgttctcttttacaccaccctt |
412 |
Q |
| |
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|| || ||| ||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
18703796 |
gctttcttcacattactctctctcttctttgttctcttttacaacaccctt |
18703846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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